View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_65 (Length: 356)
Name: NF11069A_low_65
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 3018553 - 3018240
Alignment:
| Q |
11 |
tgacatggaaatatcaatgatcgaatttatcatcatgaataatttagtgtggaaattaccaaagcctctaaatcattagttatacaatgattggcttgat |
110 |
Q |
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| T |
3018553 |
tgacatggaaatatcaatgatcgaatttatcatcatgaat---ttagtgtggaaattaccaaagcctctaaatcattagttatacaatgattggcttgat |
3018457 |
T |
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| Q |
111 |
attattagattactatgtttcacnnnnnnnnntcactagctctacagcttaggctttaggatgttccaatgcgacacaattttaaagagcaaacactcat |
210 |
Q |
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| T |
3018456 |
attattagattactatgtttcacaaaaaaaaatcactagctctacagcttaggctttaggatgttccaatgcgacacaattttaaagagcaaacactcat |
3018357 |
T |
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| Q |
211 |
tttagttcttttggtaacactgaaattgtaaaagttattgagcatatgctgcattctagtttcccatgtcccaaattcacatgaattttctgaagctaga |
310 |
Q |
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| T |
3018356 |
tttagttcttttggtgacactgaaattgtaaaagttattgagcatatgctgcattctagtttcccatgtcccaaattgacatgaa-----tgaagctaga |
3018262 |
T |
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| Q |
311 |
taggataattcaattctacgtt |
332 |
Q |
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|||||||||||||||||||||| |
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| T |
3018261 |
taggataattcaattctacgtt |
3018240 |
T |
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