View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_66 (Length: 354)
Name: NF11069A_low_66
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 22015034 - 22015361
Alignment:
| Q |
4 |
gagtttggtgttaattgatcgcaataaaaactattgcatgtgttaatctgcaagcatttaagataagatattatgaaattaacagttatgtaggatattt |
103 |
Q |
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| T |
22015034 |
gagtttggtgtgaattgatcgcaataaaaactattgcatgtgttaatctgcaagcatttaagataagatattatgaaattaacagttatgtaggatattt |
22015133 |
T |
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| Q |
104 |
gtagacatcaacatggtaagatagctctatcatgaagataaataatccagtaaaacgaaaccgtctgataagcacagatcgaactattcttttgcctttt |
203 |
Q |
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| T |
22015134 |
gtagacatcaacatggtaagatagctctatcatgaagataaacaatccagtaaaacgaaaccgtctgataagcacagatcgaactattcttttgcctttt |
22015233 |
T |
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| Q |
204 |
actnnnnnnngaaagatgataatccagaaaaacattaactgaataaaactatgtggatagctaaaaggaaaaaacatacaattggatcaggtgcattagc |
303 |
Q |
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| T |
22015234 |
actaaaaaaagaaagatgataatccagaaaaacattaactgaataaaactatgtggatagctaaaaggaaaaaacatacaattggatcaggtgcattagc |
22015333 |
T |
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| Q |
304 |
ctgctggcacataatccagggaacacct |
331 |
Q |
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| T |
22015334 |
ctgctggcacataatccagggaacacct |
22015361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 49588253 - 49588209
Alignment:
| Q |
162 |
aaccgtctgataagcacagatcgaactattcttttgccttttact |
206 |
Q |
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| T |
49588253 |
aaccgtgtgataagcacaaagcgaactattctttcgccttttact |
49588209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 33891597 - 33891641
Alignment:
| Q |
162 |
aaccgtctgataagcacagatcgaactattcttttgccttttact |
206 |
Q |
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| T |
33891597 |
aaccgtgtgataagcacatagcgaactattctttcgccttttact |
33891641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 5900530 - 5900574
Alignment:
| Q |
162 |
aaccgtctgataagcacagatcgaactattcttttgccttttact |
206 |
Q |
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| T |
5900530 |
aaccgtgtgataagcacaaagcgaactattctttcgccttttact |
5900574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 40060476 - 40060416
Alignment:
| Q |
4 |
gagtttggtgttaattgatcgcaataaaaactattgcatgtgttaatctgcaagcatttaa |
64 |
Q |
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||||||||||| ||||||||||| ||||| | |||||| || |||||||||| ||| |||| |
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| T |
40060476 |
gagtttggtgtgaattgatcgcagtaaaatccattgcaggtattaatctgcatgcagttaa |
40060416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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