View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_7 (Length: 486)
Name: NF11069A_low_7
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 486
Target Start/End: Original strand, 500155 - 500629
Alignment:
| Q |
7 |
aaaacagtttgtttcaaatttaaccggcaatcagcaattgtagccatttcatccaaacaccatgtggatgaagcataatcttttgagaaaataataatag |
106 |
Q |
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|||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
500155 |
aaaacagtgtgattcaaatttaactggcaatcagcaattgtagccatttcatccaaacaccatgttgatgaagcataatcttttgagaaaataataatag |
500254 |
T |
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| Q |
107 |
aaacacgtgattgtcgaattgcgcgaagaagttgagttgaaatagaacgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaat |
206 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
500255 |
aaacacgtgattgtcgaattgcatgaagaagttgagttgaaatagaatgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaat |
500354 |
T |
|
| Q |
207 |
gagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacacatcatatctatagattagctttggatgctgctat |
306 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
500355 |
gagatgagcatagagatgatcaacaaaagtgttgcgtgtgtcggaacctctgaaactgataaacacatcatatcta-----tagctttggatgctgctat |
500449 |
T |
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| Q |
307 |
tagaagaagaactacaacttgacagatcccaaaaccgtcgcttaggcattgcacctatctgctataagatacgaatgaaaatgtttctaactttgaatca |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
500450 |
tagaagaagaactacaacttgacagatcccaaaaccgtcgcttaggcattgcacctatctgctataagatacgaacgaaaatgtttctaactttgaatca |
500549 |
T |
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| Q |
407 |
attatagtataaagaaacgatcgtaaaagactagttctattgacaatgccgatattgttaggttgtacgcctattctctg |
486 |
Q |
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| T |
500550 |
attatagtataaagaaacgatcttaaaagacaagttctattgacaatgccgatattgctaggttgtatacctattctctg |
500629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 48 - 275
Target Start/End: Original strand, 25436331 - 25436558
Alignment:
| Q |
48 |
agccatttcatccaaacaccatgtggatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcgcgaagaagttgagttgaa |
147 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||| |||| ||||| |||||||||| | |||||||| | |||| |
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| T |
25436331 |
agccatttcatccaaacaccatgttgatgaagcataatctcttgagaaaacaatgatacaaacccgtgaccgtcgaattgcttgtagaagttggggtgaa |
25436430 |
T |
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| Q |
148 |
atagaacgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgt |
247 |
Q |
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| T |
25436431 |
atggcttctcctttttggagctgcttgtcatccttgaaggtaaaaataccttttctaactagatgagagtggagatgatcaacaaaagaattgcgggtct |
25436530 |
T |
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| Q |
248 |
cggaacctctaaaactgataaacacatc |
275 |
Q |
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| T |
25436531 |
cagaacctctaaaactgatgaacacatc |
25436558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 48 - 285
Target Start/End: Complemental strand, 25484508 - 25484271
Alignment:
| Q |
48 |
agccatttcatccaaacaccatgtggatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcgcgaagaagttgagttgaa |
147 |
Q |
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|||||||||||||||||||||||| || |||||||||||||| ||||||| || ||||||| ||||| ||| ||||||| | |||||||| | |||| |
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| T |
25484508 |
agccatttcatccaaacaccatgttgaagaagcataatctttggagaaaacaacgatagaaatgcgtgactgttgaattgcttgtagaagttggggtgaa |
25484409 |
T |
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| Q |
148 |
atagaacgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgt |
247 |
Q |
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| T |
25484408 |
atggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagcgtagagatggtcaacaaaggaattacgggtgt |
25484309 |
T |
|
| Q |
248 |
cggaacctctaaaactgataaacacatcatatctatag |
285 |
Q |
| |
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| T |
25484308 |
cagaacctctgaaactgatgaacacatcgtatctatag |
25484271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 48 - 285
Target Start/End: Complemental strand, 25636749 - 25636512
Alignment:
| Q |
48 |
agccatttcatccaaacaccatgtggatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcgcgaagaagttgagttgaa |
147 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| ||||| | ||| |||||||| || || | | |||||| | | |||||| |||| |
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| T |
25636749 |
agccatttcatccaaacaccatgttgatgaagcataatctttggagaagacaatgatagaaacccgcgaatctttaattgcctgcaaaagttggagtgaa |
25636650 |
T |
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| Q |
148 |
atagaacgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgt |
247 |
Q |
| |
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|| || ||||| | ||| | |||||||| ||||| |||||||||||||| ||||||||||||||||||| ||| |||| |||||||| |||| |
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| T |
25636649 |
atggattcgcctttctgaagcgatttgtcatccttgaaggtcgaaataccttttctagtgagatgagcatagagatggtcaacaaaggtgttgcgggtgt |
25636550 |
T |
|
| Q |
248 |
cggaacctctaaaactgataaacacatcatatctatag |
285 |
Q |
| |
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| | |||||| ||||||||||| ||||||||| ||||| |
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| T |
25636549 |
caggacctctgaaactgataaatacatcatatttatag |
25636512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 283
Target Start/End: Complemental strand, 25442557 - 25442322
Alignment:
| Q |
48 |
agccatttcatccaaacaccatgtggatgaagcataatcttttgagaaaataataatagaaacacgtgattgtcgaattgcgcgaagaagttgagttgaa |
147 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| ||||| | ||| |||||||| || || | | |||||| | | |||||| |||| |
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| T |
25442557 |
agccatttcatccaaacaccatgttgatgaagcataatctttggagaagacaatgatagaaacccgcgaatctttaattgcctgcaaaagttggagtgaa |
25442458 |
T |
|
| Q |
148 |
atagaacgacctttgttgagctgtgcatcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgt |
247 |
Q |
| |
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|| || ||||| | ||| | |||||||| ||| |||||||||||||||| |||||||| | |||||||| ||| |||| | ||||| |||| |
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| T |
25442457 |
atggattcgcctttctgaagcgatttgtcatccttgaagacgaaaataccttttctagtgagatgatcgtagagatggtcaacaaaggaattgcgggtgt |
25442358 |
T |
|
| Q |
248 |
cggaacctctaaaactgataaacacatcatatctat |
283 |
Q |
| |
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| | ||||||||||||||| |||||||| ||||||| |
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| T |
25442357 |
caggacctctaaaactgatgaacacatcgtatctat |
25442322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 284
Target Start/End: Original strand, 25478952 - 25479049
Alignment:
| Q |
187 |
gtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacacatcatatctata |
284 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| ||| |||| || || || ||||| |||||| |||||||||||||| || |||||||| |
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| T |
25478952 |
gtgaaaataccttttctagtgagatgagcatagagatggtcagcaaaggttttacgggtgtcaatacctctgaaactgataaacacgtcgtatctata |
25479049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 285
Target Start/End: Original strand, 35105988 - 35106099
Alignment:
| Q |
174 |
atcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacaca |
273 |
Q |
| |
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||||||||| |||| |||||||| ||||| | ||||||||||| |||||||| ||||||||||||| ||||| | |||||| |||||||||||||| |
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| T |
35105988 |
atcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcgacaaaagtgttgcgcgtgtctggacctctgaaactgataaacacg |
35106087 |
T |
|
| Q |
274 |
tcatatctatag |
285 |
Q |
| |
|
|| ||||||||| |
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| T |
35106088 |
tcgtatctatag |
35106099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 285
Target Start/End: Original strand, 35169648 - 35169759
Alignment:
| Q |
174 |
atcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacaca |
273 |
Q |
| |
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||||||||| |||| ||||| ||| |||||| | ||||||||||| ||||||||| |||||||||| || ||||| | ||||| ||||||||||||||| |
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| T |
35169648 |
atcatccttgaaggcgaaaacaccctttctagttagatgagcataaagatgatcaacaaaagtgttacgggtgtcagcgcctctgaaactgataaacaca |
35169747 |
T |
|
| Q |
274 |
tcatatctatag |
285 |
Q |
| |
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|| ||| ||||| |
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| T |
35169748 |
tcgtatttatag |
35169759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 35177955 - 35178050
Alignment:
| Q |
190 |
aaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacacatcatatctatag |
285 |
Q |
| |
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|||||||||||||| | ||||||||||| ||||||||| ||||||||||||| ||||| | |||||| |||||||||||||| || ||| ||||| |
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| T |
35177955 |
aaaataccttttcttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtctggacctctgaaactgataaacacgtcgtatttatag |
35178050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 35055076 - 35055173
Alignment:
| Q |
175 |
tcatccttaaaggtgaaaataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacac |
272 |
Q |
| |
|
|||||||| |||| |||||||||||||| | ||||||||||| ||||||||| ||||| | ||||| ||||| | ||||||||||||||| ||||| |
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| T |
35055076 |
tcatccttgaaggcaaaaataccttttcttgttagatgagcataaagatgatcaacaaaactattgcgagtgtcaggacctctaaaactgatgaacac |
35055173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 35047044 - 35047128
Alignment:
| Q |
193 |
ataccttttctaatgagatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacacatcat |
277 |
Q |
| |
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||||||||||| ||||||||| |||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
35047044 |
ataccttttctgatgagatgatgatagagatgatcgatgaaagtgttgcgagtgtcggtgcctctgaaactgataaacacatcat |
35047128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 35183971 - 35184048
Alignment:
| Q |
208 |
agatgagcatagagatgatcatcaaaagtgttgcgtgtgtcggaacctctaaaactgataaacacatcatatctatag |
285 |
Q |
| |
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|||||||||| ||||||||| |||||||| |||| ||||| | ||| | ||||||||||||||||||||||||||| |
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| T |
35183971 |
agatgagcatgaagatgatcaacaaaagtgctgcgggtgtcagcaccacggaaactgataaacacatcatatctatag |
35184048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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