View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_low_70 (Length: 341)
Name: NF11069A_low_70
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_70 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 7447143 - 7447495
Alignment:
| Q |
1 |
gttgataacggatatgatgatcacgtatttttcatggctaatgaaacatgttactacaatggcatggaatggataagtttgtact--------------- |
85 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7447143 |
gttgataacggatatgatgacgacgtatttttcatgcccaatgaaacatgttactacaatggcatggaatggataagtttgtacatgtagaagaaaaaaa |
7447242 |
T |
|
| Q |
86 |
aattaagaatatattagtaataataatattgaatttgtacataatgtgaatgatcccaatatgtaaattaattgtttgctattagctagtgtgtttattt |
185 |
Q |
| |
|
|| ||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7447243 |
aaaaaagaatatattagtaataata---tagcatttgtacataatgtgaatgatcccaatatgtaaattaattgtttgctactagctagtgtgtttattt |
7447339 |
T |
|
| Q |
186 |
aactatgatttgggaacatatatatccattaacataatgattttcattttgactccaaatcgtatggtatccactactttagttttcgtcaccttctata |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7447340 |
aactatgatttgggaacatatatatccattaacataatgattttcattttgactccaaatggtatggtatccactactttagtttttgtcaccttctata |
7447439 |
T |
|
| Q |
286 |
agatgtatatattcatgtgtcgtgtgttttaagctcatcaaattatcaatgctata |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7447440 |
agatgtatatattcatgtgtcgtgtgttttaagctcatcaaattatcaatgctata |
7447495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University