View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_71 (Length: 339)
Name: NF11069A_low_71
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 25633365 - 25633675
Alignment:
| Q |
1 |
aatattaggaaaccagaaaaatgtatggaaaagtattattctcattaatgaagt--atctgttacagcaagtatatatagacatatgtttgtgtacatta |
98 |
Q |
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| T |
25633365 |
aatattaggaaaccagaaaaatgaatggagaagtattattctcattgatgaagtgtatctgttacagcaagtatatatagacatatgtttgtgtacatta |
25633464 |
T |
|
| Q |
99 |
attaagctatcatatgctatagtgtagctaagcactcttagatctagttgcttaggctgcaagtaatgattaacaa-taatgttaccgacttctttatct |
197 |
Q |
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| T |
25633465 |
attaagctatcatatactatagtgtagctaagtactcttagatctagttgcttaggctgcaagtaatgattaacaactaatgttaccgacttctttatct |
25633564 |
T |
|
| Q |
198 |
ttatcatctaataatatattctggatataattaattgattctgaaatttagatattggtttattaattctttaatgtttttagtttatgtgtctcactgt |
297 |
Q |
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| T |
25633565 |
ttatcatctaataatatattctggatataattaattgattctgaaatttagatatttgtttattaattctttaatgtttttagtttatgtgtctcactgt |
25633664 |
T |
|
| Q |
298 |
gtttaataaca |
308 |
Q |
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| T |
25633665 |
gtttaataaca |
25633675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 28669485 - 28669586
Alignment:
| Q |
60 |
ttacagcaagtatatatagaca-tatgtttgtgtacattaattaagctatcatatgctatagtgtagctaagcactcttagatctagttgcttaggctgc |
158 |
Q |
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| T |
28669485 |
ttacagcaagtatatatagacagaatgcttgtctac----attaagctatcatgtgttatagtgtagctaattactctgcga-ctagttgcttagactgc |
28669579 |
T |
|
| Q |
159 |
aagtaat |
165 |
Q |
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| T |
28669580 |
aagtaat |
28669586 |
T |
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