View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_low_77 (Length: 334)
Name: NF11069A_low_77
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_77 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 3 - 315
Target Start/End: Complemental strand, 2838812 - 2838500
Alignment:
| Q |
3 |
agacaatatgagaggataattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaaggagaatctct |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838812 |
agacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaaggagaatctct |
2838713 |
T |
|
| Q |
103 |
ttttggaaaaggaatttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgtgaagaaaga |
202 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838712 |
ttttggaaaaggaacttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgtgaagaaaga |
2838613 |
T |
|
| Q |
203 |
ttgcgctgatgcagaccatggagaagaggtggaggaaaacagtcaacacaaggatcaagtgtgcaatgatatgcatagatccttttatgatactgagtct |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838612 |
ttgcgctgatgcagaccatggagaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgatactgagtct |
2838513 |
T |
|
| Q |
303 |
gatgttcttgatg |
315 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2838512 |
gatgttcttgatg |
2838500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 2842913 - 2842784
Alignment:
| Q |
3 |
agacaatatgagaggataattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaaggagaatctct |
102 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |
|
|
| T |
2842913 |
agacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaagggaaaatcttt |
2842814 |
T |
|
| Q |
103 |
ttttggaaaaggaatttgaaagttataggc |
132 |
Q |
| |
|
|||||||||||||| |||||| || ||||| |
|
|
| T |
2842813 |
ttttggaaaaggaacttgaaacttttaggc |
2842784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 2842573 - 2842522
Alignment:
| Q |
268 |
atgatatgcatagatccttttatgatactgagtctgatgttcttgatgtcca |
319 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2842573 |
atgatttgcatagctccttttatgatactgagtctgatgttcttgatgtcca |
2842522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 2842705 - 2842671
Alignment:
| Q |
136 |
cactttcatttgaaacttgtgatgatccatcacag |
170 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
2842705 |
cactttcatttgaaacatgtgatgatccatcacag |
2842671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University