View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_8 (Length: 481)
Name: NF11069A_low_8
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 331 - 476
Target Start/End: Original strand, 49294196 - 49294341
Alignment:
| Q |
331 |
catggatttttgcaggttaggttgaatgggcttttacattgtgatgacatctctgcattcaaggttctcatactaatttaaacaccttctatatcacatt |
430 |
Q |
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| T |
49294196 |
catggatttttgcaggttaggttgaatgggcttttacattgtgatgatatctctgcattcaaggttctcatgctaatttaaacaccttctatatcacatt |
49294295 |
T |
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| Q |
431 |
atagtttaattgcctcatttactttatgtgtgaataaaacaccaaa |
476 |
Q |
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| T |
49294296 |
atagtttaattgcctcatttactttatgtgtgagtaaaataccaaa |
49294341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 49293874 - 49293990
Alignment:
| Q |
19 |
acttccgtcgctgaagcatgcaacaattctattcttcttctcggtccccgtggctccggcaagcttgcggtatgttttcctcacacatctacatatactt |
118 |
Q |
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| T |
49293874 |
acttccgtcgctgaagcatgcaacaattctattcttcttctcggtccccgtggctccggcaagcttgcggtatgttttcctcacacatctacatatactt |
49293973 |
T |
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| Q |
119 |
aaagggtttctaattca |
135 |
Q |
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| T |
49293974 |
aatgggtttctaattca |
49293990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 49294033 - 49294116
Alignment:
| Q |
178 |
ggatctagttcttcaagatttgttgattcaatatccagactccatttcagtggtattcaattcaatttttaattccttgcctcc |
261 |
Q |
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| T |
49294033 |
ggatctagttcttcaagatttgttgattcaatatccagactccatttcagtggtattcaattcaatttttaattccttgcctcc |
49294116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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