View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_low_80 (Length: 326)
Name: NF11069A_low_80
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_80 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 44999135 - 44999350
Alignment:
| Q |
6 |
agtatcatagagaggcacacaaaccaagctatgggcgcaacaagcctacatacatcaacataaacaagtttatgaattataatagaacacaatcatatat |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44999135 |
agtatcatagagaggcacacaaaccaagctatgggcgcaacaagcctacatacatcaacataaacaagtttatgaattataatagaacacaatcatatat |
44999234 |
T |
|
| Q |
106 |
agaaggaaggaaaaaataaataaataaagaaatgtgagaacgttatatagaaatgggaacctccattgccacaatccactgaggacaatttgatccataa |
205 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44999235 |
agaaggaaggaaaaaataaataaat----aaatgtgagaacgttatatagaaatgggaacctccattgccacaatccactgaggacaatttgatccataa |
44999330 |
T |
|
| Q |
206 |
actccaattcgtgagcccta |
225 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
44999331 |
actccaattcgtgagcccta |
44999350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University