View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_86 (Length: 311)
Name: NF11069A_low_86
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_86 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 26664540 - 26664850
Alignment:
| Q |
1 |
tcaattacttaatcatcgcatagttcaatcttgttacataatttacctccataattgtatcagcaccaaactccttcctccattctagcatatcagccca |
100 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26664540 |
tcaagtacttaatcatcacatagttcaatcttgttacataatttacctccataattgtatcagcaccaaactccttcctccattctagcatatcagccca |
26664639 |
T |
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| Q |
101 |
catatgctttgcctttccaatatcaaatttccttgctttcagaaatctgtaaaacatagataataatagtatatctataagttcatgaaagtagataaat |
200 |
Q |
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| T |
26664640 |
catatgctttgcctttccaatatcaaatttccttgctttcagaaatctgtaaaacataaataataatagtatatctataagttcatgaaagtagataaat |
26664739 |
T |
|
| Q |
201 |
attgacaactgtggtagcggatcacagaaaatagtggtttatttaaattccgctataatgcagtgttataacatcgctggagccgctattcaataacacg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26664740 |
attgacaactgtggtagcggatcacagaaaatagtggtttatttaaattccgctataatgcagtgttataacatcgctggagccgctattcaataacacg |
26664839 |
T |
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| Q |
301 |
gtcaatatagg |
311 |
Q |
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||||||||||| |
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| T |
26664840 |
gtcaatatagg |
26664850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 26671617 - 26671740
Alignment:
| Q |
25 |
tcaatcttgttacataatttacctccataattgtatcagcaccaaactccttcctccattctagcatatcagcccacatatgctttgcctttccaatatc |
124 |
Q |
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| T |
26671617 |
tcaatcttgttacataatttacctccataattgtatcagcaccaaattccttcctccattgtagcatatcagcccacatattctttgctttttcaatatc |
26671716 |
T |
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| Q |
125 |
aaatttccttgctttcagaaatct |
148 |
Q |
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||| ||||||||||| |||||||| |
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| T |
26671717 |
aaacttccttgctttaagaaatct |
26671740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 26643671 - 26643786
Alignment:
| Q |
12 |
atcatcgcatagttcaatcttgttacataatttacctccataattgtatcagcaccaaactccttcctccattctagcatatcagcccacatatgctttg |
111 |
Q |
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||||||||| || ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
26643671 |
atcatcgcaaaggtcaatctcgttacataatttaccttcataattgtatcaataccaaactccttcctccattgtagcatatcagcccacatctgctttg |
26643770 |
T |
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| Q |
112 |
cctttccaatatcaaa |
127 |
Q |
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| T |
26643771 |
ctttttcaatatcaaa |
26643786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 26638706 - 26638613
Alignment:
| Q |
44 |
tacctccataattgtatcagcaccaaactccttcctccattctagcatatcagcccacatatgctttgcctttccaatatcaaatttccttgct |
137 |
Q |
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| T |
26638706 |
tacctccatgatagtgtcagcaccaaattccctcctccattggagcatatctgcccacatttgctttgttttttcaatgtcaaacttccttgct |
26638613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 54781429 - 54781535
Alignment:
| Q |
42 |
tttacctccataattgtatcagcaccaaactccttcctccattctagcatatcagcccacatatgctttgcctttccaatatcaaatttccttgctttca |
141 |
Q |
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||||||| |||||| || ||||||||||||||| | ||||||| |||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
54781429 |
tttacctgcataatggtgtcagcaccaaactcccttctccattgtagcatgtcagcccacatatgctttgctttttcaatatcaaatttccttgctttca |
54781528 |
T |
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| Q |
142 |
gaaatct |
148 |
Q |
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||||||| |
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| T |
54781529 |
gaaatct |
54781535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 52489644 - 52489740
Alignment:
| Q |
45 |
acctccataattgtatcagcaccaaactccttcctccattctagcatatcagcccacatatgctttgcctttccaatatcaaatttccttgctttca |
141 |
Q |
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| T |
52489644 |
acctctataattgtatctgtaccatagtctttcctccattggatcatgttggcccacataagctttgctttctcaatatcaaacttccttgctttca |
52489740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 7210125 - 7210221
Alignment:
| Q |
45 |
acctccataattgtatcagcaccaaactccttcctccattctagcatatcagcccacatatgctttgcctttccaatatcaaatttccttgctttca |
141 |
Q |
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||||||||||||||||||| |||| |||| |||||||| | | ||| | ||||||||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
7210125 |
acctccataattgtatcagtaccatactctttcctccactggatcatgttagcccacatgagctttgccttttcaatatcaaatttcctcgctttca |
7210221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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