View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_89 (Length: 309)
Name: NF11069A_low_89
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_89 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 22015112 - 22014824
Alignment:
| Q |
1 |
atttcataatatcttatcttaaattctttcagattaacacatgcaataggttttattgcgatcaattcacaccaaactctgacaacaaaccaaaaatgtg |
100 |
Q |
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| T |
22015112 |
atttcataatatcttatcttaaatgcttgcagattaacacatgcaatagtttttattgcgatcaattcacaccaaactctgacaacaaaccaaaaatgtg |
22015013 |
T |
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| Q |
101 |
gaccgagaattggagcggatggttagtagcgaccttttctatttaaatcattttgttatttgaataacatactcaaaaaatataatctgatttaannnnn |
200 |
Q |
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| T |
22015012 |
gaccgagaattggagcggatggttagtagcgaccttttctatttaaatcattttgttatttgaatagcatactcaaaaaatataatatgatttaattttt |
22014913 |
T |
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| Q |
201 |
nncccctattgcaaccttttgaattctttgaaaccataggtttcttgcatttggaggtgctgtgccttatagaccagtggaagatcttg |
289 |
Q |
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| T |
22014912 |
ttcccctgttgcaaccttttgaattctttgaaaccataggtttcttgcatttggaggtgctgtgccttatagaccagtggaagatcttg |
22014824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 40078495 - 40078591
Alignment:
| Q |
30 |
cagattaacacatgcaataggttttattgcgatcaattcacaccaaactctgacaacaaaccaaaaatgtggaccgagaattggagcggatggttag |
126 |
Q |
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| T |
40078495 |
cagattaatacatgcaatggattttactgtgatcaattcacaccaaactctaatacaaagccgaaaatgtggactgagaattggagtggatggttag |
40078591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 40060427 - 40060523
Alignment:
| Q |
30 |
cagattaacacatgcaataggttttattgcgatcaattcacaccaaactctgacaacaaaccaaaaatgtggaccgagaattggagcggatggttag |
126 |
Q |
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| T |
40060427 |
cagattaatacctgcaatggattttactgcgatcaattcacaccaaactctaatacaaagccaaaaatgtggactgaaaattggagtgcatggttag |
40060523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 40086323 - 40086418
Alignment:
| Q |
31 |
agattaacacatgcaataggttttattgcgatcaattcacaccaaactctgacaacaaa-ccaaaaatgtggaccgagaattggagcggatggttag |
126 |
Q |
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| T |
40086323 |
agattaatacctgcaatggattttactgcgatcaattcacaccaaactct-aaaacaaagccaaaattgtggactgaaaattggagtgcatggttag |
40086418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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