View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_9 (Length: 479)

Name: NF11069A_low_9
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_9
NF11069A_low_9
[»] chr1 (1 HSPs)
chr1 (9-479)||(46399562-46400028)


Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 479
Target Start/End: Original strand, 46399562 - 46400028
Alignment:
Q  9 aatgagcataattttcccacaacgcttccccaaaagattcacattttctgctgccactagaaaaggagggaagatcttgagtgtttgcaccacaacttca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46399562 aatgagcataattttcccacaacgcttccccaaaagattcacattttctgctgccactagaaaaggagggaagatcttgagtgtttgcaccacaacttca 46399661  T
Q  109 cccatctttatatgtatatagtggaatcgacgatgtcaaatnnnnnnnnngtttaaaaagcttatttgagaggcaaatcaacgcaccattaatcgaagca 208  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||| |||||||||||||||| ||| |||||||||||||||    
T  46399662 cccatctttatatgtatatagtggaatcgacgatgtcaaataaaaaaaaagtttaaaaagcttctttgagaggcaaatcaccgcgccattaatcgaagca 46399761  T
Q  209 aaacctttattgcattattattataatgcaagaagtgtatggtatggagtcagaaaattttaaccaacttgttatgtggatagatatcaatggtaaaatt 308  Q
    ||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46399762 aaacctttattgcattattattataatgcaagaagt-----gtatggagtcagaaaattttaaccaacttgttatgtggatagatatcaatagtaaaatt 46399856  T
Q  309 ttaatggcaacaatgaatg-nnnnnnnnnnnttactaatagataattgaatttttcacctagtggagacagttgccattttgcaccttgtgtatacacat 407  Q
    ||||||||||||||||| |            |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  46399857 ttaatggcaacaatgaaagaaaaataaaatattactaatagataattgaatttttcacccagtggagacagttgccattttgccccttgtgtatacacat 46399956  T
Q  408 ggatccgccatggtaaatcatggaaaatcagtggtaccatgccaaattcaaaaagatgaaaaggaatgaaaa 479  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  46399957 ggatccgccatggtaaatcatgaaaaataagtgggaccatgccaaattcaaaaagatggaaaggaatgaaaa 46400028  T

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