View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_90 (Length: 309)
Name: NF11069A_low_90
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_90 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 5950916 - 5950630
Alignment:
| Q |
13 |
tggacatcacaaattgggatccttctgaaattgctactatgattgaagcagagatatcaatgctacttccagataggacgaacagttatccagacgacga |
112 |
Q |
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| T |
5950916 |
tggacatcacaaattgggatccttctgaaattgctactatgattgaagcagagatatcaatgctacttccagataggacgaacagttatcaagacgacga |
5950817 |
T |
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| Q |
113 |
gaataatgcaagtcctcgtcgttatcatcattttccctctgtctcttctgtttcatcgtcacaagaatcattgtcgggtgcagtcaatagagctgatgac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5950816 |
gaataatgcaagtcctcgtcgttatcatcattttccctctgtctcttctgtttcatcgtcacaagaatcattgtcgggtgcagtcaatagagttgatgac |
5950717 |
T |
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| Q |
213 |
atatcaaatggatatcgctggcaccatggtacgtcttctttttcccttcacaagctatgttgtggatgtcctatttcaatgatgtcc |
299 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950716 |
atatcaaatggatatcgctggcaccctggtacgtcttctttttcccttcacaagctatgttgtggatgtcctatttcaatgatgtcc |
5950630 |
T |
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