View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_low_91 (Length: 302)
Name: NF11069A_low_91
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_91 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 16792197 - 16792485
Alignment:
| Q |
8 |
caatgctgaaatcttccatcaactgttcagtattttgtgccatcaatccaactacacctttcacaactgcagcctctctctcgactacgttttccgacac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16792197 |
caatgctgaaatcttccatcaactgttcagtattttgtgccatcaatccaactacacctttcacaactgcagcctctctctcgactacgttttccgacac |
16792296 |
T |
|
| Q |
108 |
caatccttcgccacaactgcagaaaactctattcaagctctcgaaatcttcttgaatcataacatgatctgacctattgaacactcttgagttccctcca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16792297 |
caatccttcgccacaactgcagaaaactctattcaagctctcgaaatcttcttgaatcataacatgatctgacctattgaacactcttgagtttcctcca |
16792396 |
T |
|
| Q |
208 |
gctagcaaaaccattaagaatgcatcaaaggaagctctcattacttccttcattgccaatggttgagctctatcaactaatagtgtagt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16792397 |
gctagcaaaaccattaagaatgcatcaaaggaagctctcattacttccttcattgccaatggttgagctctatcaactaatagtgtagt |
16792485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 32735885 - 32735814
Alignment:
| Q |
14 |
tgaaatcttccatcaactgttcagtattttgtgccatcaatccaactacacctttcacaactgcagcctctc |
85 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||| ||| || |||| ||| ||||||||||||| |
|
|
| T |
32735885 |
tgaaatcttccatcaactgttcagtactttgtcccatcaatgcaatcactccttgcaccactgcagcctctc |
32735814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 281
Target Start/End: Complemental strand, 32735712 - 32735618
Alignment:
| Q |
187 |
aacactcttgagttccctccagctagcaaaaccattaagaatgcatcaaaggaagctctcattacttccttcattgccaatggttgagctctatc |
281 |
Q |
| |
|
||||| |||||| | || ||||| ||||||||||| | |||||| || || ||||| |||||| ||| || |||||||||||||||||||||| |
|
|
| T |
32735712 |
aacacccttgaggttccaccagcaagcaaaaccataaggaatgcgtcgaatgaagccttcattatttcttttgttgccaatggttgagctctatc |
32735618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University