View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_92 (Length: 301)

Name: NF11069A_low_92
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_92
NF11069A_low_92
[»] chr4 (15 HSPs)
chr4 (1-152)||(38147357-38147515)
chr4 (3-125)||(12639721-12639843)
chr4 (3-117)||(28103806-28103920)
chr4 (29-118)||(917683-917772)
chr4 (9-125)||(43012754-43012870)
chr4 (9-96)||(23643431-23643518)
chr4 (31-96)||(12639208-12639273)
chr4 (9-125)||(54714873-54714989)
chr4 (31-93)||(28104360-28104421)
chr4 (31-93)||(919115-919176)
chr4 (31-125)||(43013130-43013224)
chr4 (57-125)||(12629834-12629902)
chr4 (7-38)||(918651-918682)
chr4 (57-118)||(25163430-25163491)
chr4 (5-45)||(23037998-23038038)
[»] chr2 (9 HSPs)
chr2 (3-124)||(4329599-4329720)
chr2 (3-125)||(39865298-39865420)
chr2 (3-125)||(29770766-29770888)
chr2 (9-137)||(30674429-30674557)
chr2 (9-124)||(9074598-9074713)
chr2 (31-122)||(4330136-4330226)
chr2 (9-113)||(9914204-9914308)
chr2 (31-93)||(29771299-29771360)
chr2 (31-125)||(39864768-39864860)
[»] chr3 (10 HSPs)
chr3 (153-286)||(45395426-45395560)
chr3 (3-125)||(23566889-23567011)
chr3 (3-123)||(39737724-39737844)
chr3 (9-122)||(785770-785883)
chr3 (9-96)||(30385749-30385836)
chr3 (31-93)||(39737232-39737293)
chr3 (9-95)||(53153855-53153941)
chr3 (31-123)||(23566432-23566522)
chr3 (203-269)||(50470355-50470421)
chr3 (31-104)||(53153517-53153590)
[»] scaffold0064 (1 HSPs)
scaffold0064 (152-286)||(19917-20052)
[»] chr7 (11 HSPs)
chr7 (3-125)||(31166954-31167076)
chr7 (7-113)||(21971546-21971651)
chr7 (21-104)||(27596002-27596084)
chr7 (9-128)||(28750927-28751045)
chr7 (9-124)||(38916392-38916507)
chr7 (9-113)||(27230474-27230578)
chr7 (11-126)||(15577468-15577578)
chr7 (31-124)||(21972092-21972184)
chr7 (9-117)||(32741787-32741895)
chr7 (31-124)||(38916045-38916138)
chr7 (5-64)||(21948149-21948208)
[»] chr6 (7 HSPs)
chr6 (153-286)||(17922857-17922991)
chr6 (9-123)||(8700890-8701004)
chr6 (9-96)||(12307301-12307388)
chr6 (9-96)||(7727381-7727468)
chr6 (9-118)||(604984-605096)
chr6 (31-125)||(12306970-12307064)
chr6 (31-125)||(8701263-8701357)
[»] chr8 (7 HSPs)
chr8 (3-121)||(26759207-26759325)
chr8 (3-116)||(146644-146757)
chr8 (9-128)||(308301-308420)
chr8 (9-117)||(186682-186790)
chr8 (34-125)||(187049-187140)
chr8 (31-93)||(147190-147251)
chr8 (9-63)||(25277141-25277195)
[»] chr5 (7 HSPs)
chr5 (3-125)||(39121834-39121956)
chr5 (153-281)||(3623465-3623594)
chr5 (9-117)||(14393983-14394091)
chr5 (10-125)||(20983543-20983658)
chr5 (9-117)||(25672272-25672380)
chr5 (31-122)||(20983842-20983933)
chr5 (31-125)||(14394344-14394438)
[»] chr1 (2 HSPs)
chr1 (9-117)||(40888792-40888900)
chr1 (57-125)||(23269946-23270014)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 38147515 - 38147357
Alignment:
Q  1 tcaaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38147515 tcaaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatccatttatttattgacta 38147416  T
Q  101 tttactgttccttatccagtgccc-------ctggttaacattgcccaaattattaaat 152  Q
    ||||||||||||||||||||||||       | ||||| ||||||||||||||||||||    
T  38147415 tttactgttccttatccagtgcccgaaagcaccggttagcattgcccaaattattaaat 38147357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 12639721 - 12639843
Alignment:
Q  3 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||||    
T  12639721 aaagagtattgaatatagcttttattatttttaattagttgacatattttacactttaattgaggtgaattaagtgagatccatttatttattgcctatt 12639820  T
Q  103 tactgttccttatccagtgcccc 125  Q
    || ||||||||||||||| ||||    
T  12639821 tattgttccttatccagtacccc 12639843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 28103920 - 28103806
Alignment:
Q  3 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||    
T  28103920 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactctaattgagatgaattaagtgagatccatttatttaatgattatt 28103821  T
Q  103 tactgttccttatcc 117  Q
    || ||||||||||||    
T  28103820 tattgttccttatcc 28103806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 917772 - 917683
Alignment:
Q  29 atttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||||||||||||||||||| ||||| |||||||    
T  917772 atttttaattagttgacatatattacactttaattgagatgaattaacttagattcatttatttattgactatttattgttctttatcca 917683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 43012870 - 43012754
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||  || ||||||| |||||||||||| ||||||| |||    
T  43012870 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgtctatttattgt 43012771  T
Q  109 tccttatccagtgcccc 125  Q
    |||||||||||||||||    
T  43012770 tccttatccagtgcccc 43012754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 23643518 - 23643431
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 96  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||| |||| ||| |||||||||||||||||||||||    
T  23643518 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatgaagtgagatcaatttatttattg 23643431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 12639273 - 12639208
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 96  Q
    ||||||||||||||||||| |||||| ||||||||| | |||||||||||||| ||||||||||||    
T  12639273 ttttaattagttgacatattttacacattaattgaggtaaattaagtgagatccatttatttattg 12639208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 54714873 - 54714989
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    ||||||||||| | ||||||| ||||||||| || | |||| ||||||||||||| |||| ||| |||||| ||| |||||||||||| ||||||  | |    
T  54714873 tattgaatataacatttattaattttaattatttaaaatattttacactttaattaagataaatcaagtgaaatccatttatttattgcctattttttat 54714972  T
Q  109 tccttatccagtgcccc 125  Q
    || ||||||| ||||||    
T  54714973 tctttatccaatgcccc 54714989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 28104360 - 28104421
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 93  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  28104360 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagatccatttattta 28104421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 919115 - 919176
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 93  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||||||||||  |||||||||    
T  919115 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagattcatttattta 919176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 43013130 - 43013224
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 125  Q
    ||||||||||||||| |||||  |||||||||| || | ||  || ||| ||| |||||||||||| ||||||| | || |||||||||||||||    
T  43013130 ttttaattagttgacttatatctcactttaatttaggtaaaccaattgaaatccatttatttattgcctatttattatttcttatccagtgcccc 43013224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 12629902 - 12629834
Alignment:
Q  57 tttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 125  Q
    |||||||||| | ||| | || ||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  12629902 tttaattgaggtaaatcatgtaagatctattcatttattgtctatttaatgttccttatccagtgcccc 12629834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 918682 - 918651
Alignment:
Q  7 agtattgaatatagcttttattatttttaatt 38  Q
    ||||||||||||||||||||||||||||||||    
T  918682 agtattgaatatagcttttattatttttaatt 918651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 25163491 - 25163430
Alignment:
Q  57 tttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcca 118  Q
    |||||||||| | ||| |||| ||||| ||| |||||||| ||||||| |||||||||||||    
T  25163491 tttaattgaggtaaataaagtaagatctattcatttattgtctatttaatgttccttatcca 25163430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 23037998 - 23038038
Alignment:
Q  5 agagtattgaatatagcttttattatttttaattagttgac 45  Q
    ||||||||||||| | ||||||||| |||||||||||||||    
T  23037998 agagtattgaatacaacttttattaattttaattagttgac 23038038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 4329720 - 4329599
Alignment:
Q  3 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  4329720 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatctatttatttattaactatt 4329621  T
Q  103 tactgttccttatccagtgccc 124  Q
    ||||||||||||||||||||||    
T  4329620 tactgttccttatccagtgccc 4329599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 39865298 - 39865420
Alignment:
Q  3 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| | ||||||    
T  39865298 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatt 39865397  T
Q  103 tactgttccttatccagtgcccc 125  Q
    || ||||||||||||||||||||    
T  39865398 tattgttccttatccagtgcccc 39865420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 29770888 - 29770766
Alignment:
Q  3 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 102  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  ||||||||| | ||||||    
T  29770888 aaagagtattgattatagcttttattatttttaattagttgacatatattatactttaactgagatgaattaagtgagattcatttatttaattactatt 29770789  T
Q  103 tactgttccttatccagtgcccc 125  Q
    || ||||||||||||||||||||    
T  29770788 tattgttccttatccagtgcccc 29770766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 30674429 - 30674557
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||| ||||||| |||| ||| |||||||||| ||||||||||||  |||| | |||    
T  30674429 tattgaatataacatttattaattttaattagttgaaatattttacattttaattaagataaatcaagtgagatctatttatttattgcttattaattgt 30674528  T
Q  109 tccttatccagtgcccctggttaacattg 137  Q
    || |||||| ||||||| ||||| |||||    
T  30674529 tctttatccggtgcccccggttagcattg 30674557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 9074713 - 9074598
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||  |||||||||| |||||||||||| ||||||| |||    
T  9074713 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatccatttatttattgtctatttattgt 9074614  T
Q  109 tccttatccagtgccc 124  Q
    || |||||| ||||||    
T  9074613 tctttatccggtgccc 9074598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 4330136 - 4330226
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 122  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||  |||| | |||||||||||||||||    
T  4330136 ttttaattagttaacatattttaca-tttaattgagatgaattaagtgagatccatttatttaatgcatattaattgttccttatccagtgc 4330226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 9914308 - 9914204
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    ||||||||||||| ||||||| ||||| |||||||| |||| ||||||||||||| |  | ||| |||||||||  |||||||||||  ||||||| |||    
T  9914308 tattgaatatagcatttattaattttagttagttgaaatattttacactttaattaaagtaaatcaagtgagattcatttatttattacctatttattgt 9914209  T
Q  109 tcctt 113  Q
    |||||    
T  9914208 tcctt 9914204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 29771299 - 29771360
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 93  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||||||||  |||||||||    
T  29771299 ttttaattagttgacatattttaca-tataattgagatgaattaagtgagattcatttattta 29771360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 39864860 - 39864768
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 125  Q
    ||||||||| ||||||||  ||||| |||| |||||||||||||| ||||||  ||||||||| ||  |||| | || |||||||||||||||||    
T  39864860 ttttaattaattgacatagtttaca-tttatttgagatgaattaaatgagattcatttatttaatgcatattaattg-tccttatccagtgcccc 39864768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 153 - 286
Target Start/End: Complemental strand, 45395560 - 45395426
Alignment:
Q  153 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  45395560 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgttattaccatccttggatatttttctttccattaactaattatattctct 45395461  T
Q  253 caccccatgttttcc-ttccaccgcttgatgtcca 286  Q
    || |||||||||||| |||||||||||||||||||    
T  45395460 catcccatgttttcctttccaccgcttgatgtcca 45395426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 23566889 - 23567011
Alignment:
Q  3 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||  ||||||||| | ||||||    
T  23566889 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgatattcatttatttaattactatt 23566988  T
Q  103 tactgttccttatccagtgcccc 125  Q
    || ||||||||||||||||||||    
T  23566989 tattgttccttatccagtgcccc 23567011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 39737724 - 39737844
Alignment:
Q  3 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 102  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| | ||||| ||||||||| | ||||||    
T  39737724 aaagaatattgaatatagcttttattatttttaattagttaacatatattatattttaattgagatgaattaaataagatctatttatttaattactatt 39737823  T
Q  103 tactgttccttatccagtgcc 123  Q
    || ||||||||||||||||||    
T  39737824 tattgttccttatccagtgcc 39737844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 785770 - 785883
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    |||||||||||||  |||||| ||||||||| |||  |||| ||||||||| ||| || | ||| |||||||||| |||||||||||| ||||||| |||    
T  785770 tattgaatatagcaattattaattttaattaattgcaatattttacactttgattaaggtaaatcaagtgagatccatttatttattgcctatttaatgt 785869  T
Q  109 tccttatccagtgc 122  Q
    ||||||| ||||||    
T  785870 tccttattcagtgc 785883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 30385749 - 30385836
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 96  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||| || ||||||| ||||||||||||    
T  30385749 tattgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagatccatttatttattg 30385836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 39737293 - 39737232
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 93  Q
    ||||||||||||||||||| ||||| ||||||||||||| ||||||||||||  |||||||||    
T  39737293 ttttaattagttgacatattttaca-tttaattgagatggattaagtgagattcatttattta 39737232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 53153855 - 53153941
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttatt 95  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||| |||||||||  || ||||||||    
T  53153855 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagattcatctatttatt 53153941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 23566522 - 23566432
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcc 123  Q
    ||||||||||||||||||  ||||| |||| |||||||||||||||| ||||  ||||||||| ||  |||| | |||| |||||||||||||    
T  23566522 ttttaattagttgacatagtttaca-tttatttgagatgaattaagtaagatttatttatttaatgcatattaattgtt-cttatccagtgcc 23566432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 50470421 - 50470355
Alignment:
Q  203 ctattacaatccttggatgtttttctttccattaattaattatattctctcaccccatgttttcctt 269  Q
    ||||||| ||| |||||||||| | ||||| |||| |||||  |||||||| |||||||||||||||    
T  50470421 ctattaccatctttggatgtttatatttccgttaactaattgaattctctctccccatgttttcctt 50470355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 53153590 - 53153517
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactattta 104  Q
    ||||||||||||||| |||||  |||||||||| |||| ||  || ||| ||| |||||||||||| |||||||    
T  53153590 ttttaattagttgacttatatctcactttaatttagataaaccaattgaaatccatttatttattgcctattta 53153517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 152 - 286
Target Start/End: Complemental strand, 20052 - 19917
Alignment:
Q  152 tggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctc 251  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||||||||| |||||||||||    
T  20052 tggaaaatgctttattacacgacataaaccatgcacgagaaagccacgatgttattatcatccttggatgtttttctttccattaattgattatattctc 19953  T
Q  252 tcaccccatgttttcc-ttccaccgcttgatgtcca 286  Q
    ||| |||||||||||| |||||||||||||||||||    
T  19952 tcatcccatgttttcctttccaccgcttgatgtcca 19917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 31166954 - 31167076
Alignment:
Q  3 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| | ||||||    
T  31166954 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatt 31167053  T
Q  103 tactgttccttatccagtgcccc 125  Q
    || ||||||||||||||||||||    
T  31167054 tattgttccttatccagtgcccc 31167076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 21971651 - 21971546
Alignment:
Q  7 agtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| | | |||||| |    
T  21971651 agtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgagttaagtgagatc-atttatttaattattatttatt 21971553  T
Q  107 gttcctt 113  Q
    |||||||    
T  21971552 gttcctt 21971546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 27596084 - 27596002
Alignment:
Q  21 cttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactattta 104  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  27596084 cttttattatttttaattagttgac-tatattacactttaattgagatgaattaagtgagatccatttatttattggctattta 27596002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 28750927 - 28751045
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | || ||||||||||| |||||||||||| ||||||| |||    
T  28750927 tattgaatata-catttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgt 28751025  T
Q  109 tccttatccagtgcccctgg 128  Q
    ||||||||||||||||||||    
T  28751026 tccttatccagtgcccctgg 28751045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 38916392 - 38916507
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    |||| |||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||| |||||||||| |||||||||||| ||||||| |||    
T  38916392 tattaaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagatccatttatttattgtctatttattgt 38916491  T
Q  109 tccttatccagtgccc 124  Q
    || |||||||||||||    
T  38916492 tctttatccagtgccc 38916507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 27230578 - 27230474
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||| || | ||| || ||||||  |||||||||||| ||||| | |||    
T  27230578 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagattcatttatttattgtctattaattgt 27230479  T
Q  109 tcctt 113  Q
    |||||    
T  27230478 tcctt 27230474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 15577578 - 15577468
Alignment:
Q  11 ttgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttc 110  Q
    ||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | || ||||||||||| ||||     ||| ||||||| |||||    
T  15577578 ttgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccattt-----ttgtctatttattgttc 15577484  T
Q  111 cttatccagtgcccct 126  Q
    ||||||||||||||||    
T  15577483 cttatccagtgcccct 15577468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 21972092 - 21972184
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgccc 124  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||  ||||||||| ||  | || | |||||||||||||||||||    
T  21972092 ttttaattagttgacatattttaca-tttaattaagatgaattaagtgagattcatttatttaatgcattttaattgttccttatccagtgccc 21972184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 32741787 - 32741895
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    ||||||||||||| ||||||| |||||| ||||||| |||| ||| ||||||||| || | ||  |||||||||| ||||||||||||  |||||| |||    
T  32741787 tattgaatatagcatttattaattttaaatagttgaaatattttatactttaattaaggtaaaccaagtgagatccatttatttattgcttatttattgt 32741886  T
Q  109 tccttatcc 117  Q
    || ||||||    
T  32741887 tcattatcc 32741895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 38916138 - 38916045
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgccc 124  Q
    ||||||||||||||| |||||  |||||||||| |||| ||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||    
T  38916138 ttttaattagttgacttatatctcactttaatttagataaaccaattgagatctatttatttattgcctatttattatttcttatccagtgccc 38916045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 21948208 - 21948149
Alignment:
Q  5 agagtattgaatatagcttttattatttttaattagttgacatatattacactttaattg 64  Q
    ||||||||||||| || |||||||| ||||||||||||||| ||| ||||| ||| ||||    
T  21948208 agagtattgaatagagtttttattaattttaattagttgacttattttacattttgattg 21948149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 153 - 286
Target Start/End: Complemental strand, 17922991 - 17922857
Alignment:
Q  153 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||    
T  17922991 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattaccacccttggatgtttttctttccattagctaattatattctct 17922892  T
Q  253 caccccatgtttt--ccttccaccgcttgatgtcca 286  Q
    || ||||||||||  | |||||||||||||||||||    
T  17922891 ca-cccatgtttttcctttccaccgcttgatgtcca 17922857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 8701004 - 8700890
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    ||||||||||| | ||||||| |||||||||||| | |||| ||||||||||||| || | ||| |||||||||| || ||||||||| ||||||| |||    
T  8701004 tattgaatataacatttattaattttaattagttaaaatattttacactttaattaaggtaaatcaagtgagatccatctatttattgcctatttattgt 8700905  T
Q  109 tccttatccagtgcc 123  Q
    ||||||||| |||||    
T  8700904 tccttatccggtgcc 8700890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 12307301 - 12307388
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 96  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| |||| ||| |||||||||| ||||||||||||    
T  12307301 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaagataaatcaagtgagatctatttatttattg 12307388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 7727381 - 7727468
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 96  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||  |||||||||||||||||||||||    
T  7727381 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatcaatttatttattg 7727468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 605096 - 604984
Alignment:
Q  9 tattgaatatagcttttattatttttaatta---gttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttac 105  Q
    ||||||||||| | ||||||| |||||||||   ||||| |||| ||| ||||||||| || | ||| |||||||||| |||||||||||| |||||||     
T  605096 tattgaatataacatttattaattttaattattagttgaaatattttatactttaattaaggtaaatcaagtgagatccatttatttattgcctatttat 604997  T
Q  106 tgttccttatcca 118  Q
    |||||||||||||    
T  604996 tgttccttatcca 604984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 12307064 - 12306970
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 125  Q
    ||||||||||||||| |||||  |||||||||| || | ||| || | ||||  |||||||||||| ||||||| | || |||||||||||||||    
T  12307064 ttttaattagttgacttatatctcactttaatttaggtaaatcaattaagattcatttatttattgtctatttattatttcttatccagtgcccc 12306970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 8701263 - 8701357
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 125  Q
    ||||||||||||||| |||||  |||||||||| |  | ||| || ||||||  |||||||||||| ||||||| | || |||| ||||||||||    
T  8701263 ttttaattagttgacttatatatcactttaatttaagtaaatcaattgagattcatttatttattgcctatttattatttcttaaccagtgcccc 8701357  T

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Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 26759325 - 26759207
Alignment:
Q  3 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 102  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  26759325 aaagagtatttaatatagcttttattatttttaattagttggcatatattatactttaattgagatgaattaagtgagatccatttatttaattactatt 26759226  T
Q  103 tactgttccttatccagtg 121  Q
    || ||||||||||||||||    
T  26759225 tattgttccttatccagtg 26759207  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 146757 - 146644
Alignment:
Q  3 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 102  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| || |||||    
T  146757 aaagagtattgaatatagtttttattaattttaattagttgacatatattacactttaattgagattaataaagtgagatccatttatttaatggctatt 146658  T
Q  103 tactgttccttatc 116  Q
    || ||||| |||||    
T  146657 tattgttcattatc 146644  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 308420 - 308301
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | || ||||||||||| |||||||||||| ||||||| |||    
T  308420 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgt 308321  T
Q  109 tccttatccagtgcccctgg 128  Q
    || |||||| ||||||||||    
T  308320 tcattatccggtgcccctgg 308301  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 186790 - 186682
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||| ||||||| |||| ||| |||||||||| |||||||||||  ||||||| |||    
T  186790 tattgaatataacatttattaattttaattagttgaaatattttacaatttaattaagataaatcaagtgagatccatttatttattagctatttattgt 186691  T
Q  109 tccttatcc 117  Q
    |||||||||    
T  186690 tccttatcc 186682  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 187049 - 187140
Alignment:
Q  34 taattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 125  Q
    |||||||||||| |||||  |||||||||| || | || ||| ||||||  |||||||||||| ||||||| | || |||||||||||||||    
T  187049 taattagttgacttatatctcactttaatttaggtaaactaattgagattcatttatttattgcctatttattatttcttatccagtgcccc 187140  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 147190 - 147251
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 93  Q
    ||||||||||||||||||| ||| | ||||||| ||||||||||||||||||| || ||||||    
T  147190 ttttaattagttgacatattttata-tttaattaagatgaattaagtgagatccatatattta 147251  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 25277141 - 25277195
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaatt 63  Q
    ||||||||||||| ||||||| |||||||||||| | |||| | |||||||||||    
T  25277141 tattgaatatagcatttattaattttaattagttaaaatatttcacactttaatt 25277195  T

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Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 39121834 - 39121956
Alignment:
Q  3 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 102  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||  ||||||||| | ||||||    
T  39121834 aaagagtattgaatataacttttattatttttaattagttgacatatattatactttaattgagataaattaagtgagattcatttatttaattactatt 39121933  T
Q  103 tactgttccttatccagtgcccc 125  Q
    || ||||||||||||||||||||    
T  39121934 tattgttccttatccagtgcccc 39121956  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 153 - 281
Target Start/End: Complemental strand, 3623594 - 3623465
Alignment:
Q  153 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 252  Q
    |||||||||||||||  |||| | |||||||||||||||| ||||| | |||||||| | |||||||||||||| |||||||||| ||||||||||||||    
T  3623594 ggaaaatgctttatttgacgatagaaaccatgcacgagaagcccacaaagctattaccacccttggatgtttttatttccattaactaattatattctct 3623495  T
Q  253 caccccatgttttcc-ttccaccgcttgat 281  Q
    |||||||| |||||| ||||| ||||||||    
T  3623494 caccccatattttcctttccatcgcttgat 3623465  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 14394091 - 14393983
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    ||||||||||||| |||||||  ||||||||||||| |||| ||||| ||||||| |||| ||| |||||||||| ||||||||||||  |||||| |||    
T  14394091 tattgaatatagcatttattaaatttaattagttgaaatattttacattttaattaagataaatcaagtgagatccatttatttattgcttatttattgt 14393992  T
Q  109 tccttatcc 117  Q
    |||||||||    
T  14393991 tccttatcc 14393983  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 20983658 - 20983543
Alignment:
Q  10 attgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgtt 109  Q
    |||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||  || ||||||| |||||||||||| ||||||| | ||    
T  20983658 attgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgtctatttattttt 20983559  T
Q  110 ccttatccagtgcccc 125  Q
     |||||||||||||||    
T  20983558 tcttatccagtgcccc 20983543  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 25672380 - 25672272
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    |||| |||||||| ||||||| |||||||||||||| |||| ||||||||||||| | || ||  |||||||||| ||||||||||||  |||| | |||    
T  25672380 tattaaatatagcatttattaattttaattagttgaaatattttacactttaattaatataaaccaagtgagatccatttatttattgcatattcattgt 25672281  T
Q  109 tccttatcc 117  Q
    |||||||||    
T  25672280 tccttatcc 25672272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 20983842 - 20983933
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 122  Q
    ||||||||||||||| |||||  |||||||||| || | ||  || ||| ||| |||||||||||| ||||||| | || ||||||||||||    
T  20983842 ttttaattagttgacttatatctcactttaatttaggtaaaccaattgaaatccatttatttattgcctatttattatttcttatccagtgc 20983933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 14394344 - 14394438
Alignment:
Q  31 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 125  Q
    ||||||||||||||| |||||  |||||||||| || | ||  || ||||||  |||||||||||| ||||||| | || ||||| |||||||||    
T  14394344 ttttaattagttgacttatatctcactttaatttaggtaaaccaattgagattcatttatttattgtctatttattatttcttattcagtgcccc 14394438  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 40888900 - 40888792
Alignment:
Q  9 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 108  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||| |||| ||| |||| ||||| |||||| ||||| ||||| | |||    
T  40888900 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatcaagttagatccatttatgtattgcctattaattgt 40888801  T
Q  109 tccttatcc 117  Q
    | |||||||    
T  40888800 ttcttatcc 40888792  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 23270014 - 23269946
Alignment:
Q  57 tttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 125  Q
    |||||||||| | ||| |||| ||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  23270014 tttaattgaggtaaatcaagtaagatctattcatttattgtctatttaatgttccttatccagtgcccc 23269946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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