View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_95 (Length: 296)

Name: NF11069A_low_95
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_95
NF11069A_low_95
[»] chr1 (1 HSPs)
chr1 (7-296)||(1714716-1715004)


Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 296
Target Start/End: Complemental strand, 1715004 - 1714716
Alignment:
Q  7 taatttacatatattatatattgaataaattgattccctcaagnnnnnnnnctagattaaattgatattgaataatttgaacctatgatgcaggaagagt 106  Q
    |||||||||||||||||||||||||||| ||||||||||||||        ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1715004 taatttacatatattatatattgaataagttgattccctcaagaaaaaaa-ctagaataaattgatattgaataatttgaacctatgatgcaggaagagt 1714906  T
Q  107 tggaaaaacttgaaacaataggtgaatcttccacagtctgcaatgagtaagcaaagcaaaaacaaatactttttaaattagatttgtgctatttttcatc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1714905 tggaaaaacttgaaacaataggtgaatcttccacagtctgcaatgagtaagcaaagcaaaaacaaatactttttaaattagatttgtgctatttttcatc 1714806  T
Q  207 attgaatggtccattcattgtgcttttaattaatttgcagtgtcatttcaagcgttgaatccatgccagatcctatgcttccatggtaaa 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1714805 attgaatggtccattcattgtgcttttaattaatttgcagtgtcatttcaagcgttgaatccatgccagatcctatgcttccatggtaaa 1714716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University