View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_97 (Length: 296)
Name: NF11069A_low_97
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_97 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 19270926 - 19271115
Alignment:
| Q |
20 |
agtttctttatttgtgctaactcttcttgagtataaaattggggagcaagtgtagctatgacgcattgccaagcaaaattatggtgagggttgaatggcg |
119 |
Q |
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| T |
19270926 |
agtttctttatttgtgccaactcttcttgagtataaaattggggagcaagtgtagctatgacgcattgccaagcaaaattatggtgagggttgaatggcg |
19271025 |
T |
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| Q |
120 |
ctgttttcgcaatttccatgtattctttgatcttctccttagtcatagcaaatttctgttccttcgtcatggcttctgtattttccatag |
209 |
Q |
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| T |
19271026 |
ctgttttcgctatttccatgtattcgttgatcttctccttagtcatagcaaatttctgttccttcgtcatggcttctgtattttccatag |
19271115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 19271149 - 19271183
Alignment:
| Q |
248 |
gttgtgctgagtttagtgtgtggcttctttaactt |
282 |
Q |
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| T |
19271149 |
gttgtgctgagtttagtgtgtggcttctttaactt |
19271183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 1591131 - 1591286
Alignment:
| Q |
20 |
agtttctttatttgtgctaactcttcttgagtataaaattggggagcaagtgtagctatgacgcattgccaagcaaaattatggtgagggttgaatggcg |
119 |
Q |
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| T |
1591131 |
agtttctttatttctgctaactcttcttgagtataaaattgtggagcaagtgtagctatgacgcattgccaagtaaaattatggtaagggttgaatggcg |
1591230 |
T |
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| Q |
120 |
ctgttttcgcaatttccatgtattctttgatcttctccttagtcatagcaaatttc |
175 |
Q |
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| T |
1591231 |
ctgttttcgctatttccatgtattctttaatcttctccttagtcatagcaaatttc |
1591286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 39616382 - 39616564
Alignment:
| Q |
21 |
gtttctttatttgtgctaactcttcttgagtataaaattggggagcaagtgtagctatgacgcattgccaagcaaaattatggtgagggttgaatggcgc |
120 |
Q |
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||||||||||||||| ||||||||||| || ||||||||| |||||| || ||||||| ||||||||||||||||| |||||| | |||||| |||||| |
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| T |
39616382 |
gtttctttatttgtgttaactcttcttcagaataaaattgtggagcacgtatagctatcacgcattgccaagcaaagttatgggaaaggttgagtggcgc |
39616481 |
T |
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| Q |
121 |
tgttttcgcaatttccatgtattctttgatcttctccttagtcatagcaaatttctgttccttcgtcatggcttctgtatttt |
203 |
Q |
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| T |
39616482 |
cgtttttgctttttccatgtatcctttgatcttctccctagtgatagcatatctctgttccttcgtcatggcttcagtatttt |
39616564 |
T |
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