View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_high_11 (Length: 386)
Name: NF11069_high_11
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 371
Target Start/End: Complemental strand, 24425673 - 24425300
Alignment:
| Q |
11 |
cacagataactctaggactattgcaatgtcatcgcccaagtggtattttctagtgcttcaggcgcaattgac--------------attattgcgcccaa |
96 |
Q |
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|||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
24425673 |
cacaaataactctaggactactgcaatgtcagcgcccaagtggtattttctagtgcttcaggcgcaattgactatgggcttctgacattattgcacccaa |
24425574 |
T |
|
| Q |
97 |
gcgtttctgtacggagcttgaggcacaaatgaccctggtgatactgcctgtacctaattttggacaacatctaattctatcaaaaacaaagtcaaaagtt |
196 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24425573 |
gcgtttctgtacggagcttgaggcgcaaatgaccctggtgatactgcctgtacctagttttggacaacatctaattctatcaaaaacaaagtcaaaagtt |
24425474 |
T |
|
| Q |
197 |
cataattgtatcaatatcaacaattcaacatctaattttggacaaaaacatagccaaaagtccataattgtatcaatatccactttagaagcacatgaca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24425473 |
cataattgtatcaatatcaacaattcaacatctaattttggacaaaaacatagccaaaagtccataattgtatcaatatccactttagaagcacatgaca |
24425374 |
T |
|
| Q |
297 |
aatagataattcatctgattatcaacaaactatcataatttaaaacaataatgcagttgagtgggagtataattg |
371 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24425373 |
aatagataattcatctgattatcaac-aactatcataatttaaaacaataatgcagttgagtgggagtataattg |
24425300 |
T |
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