View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_high_13 (Length: 380)
Name: NF11069_high_13
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 198 - 357
Target Start/End: Original strand, 36956064 - 36956223
Alignment:
| Q |
198 |
cctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgca |
297 |
Q |
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| T |
36956064 |
cctcacaattgtttcaacacttataatcacagcatcagtagcagcatgtttagctgttccaggtgaagcagaaggaaaagcacacaatctatgtcatgca |
36956163 |
T |
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| Q |
298 |
atgtttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctacc |
357 |
Q |
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| T |
36956164 |
atgttccatgttttcattatcttcatcacaatatcattgttcagttcaattagtgctacc |
36956223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 208 - 351
Target Start/End: Original strand, 36947998 - 36948141
Alignment:
| Q |
208 |
gtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaatgtttcaag |
307 |
Q |
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| T |
36947998 |
gtttcaacccttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaacaacctatgtcatgcaatgtttcaag |
36948097 |
T |
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| Q |
308 |
cattcattatcttcatcacaatatcattcttttgttccattagt |
351 |
Q |
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| T |
36948098 |
cattcattatcttcatcacaatatcattattcagttccattagt |
36948141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 202 - 357
Target Start/End: Original strand, 36935214 - 36935369
Alignment:
| Q |
202 |
acaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaatgt |
301 |
Q |
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| T |
36935214 |
acaattgtttcaacacttataatcactgcttcagtagcagcatgtttagccgttccatgtgaagcagaaggaaaagcacacaatctatgtcatacaatgt |
36935313 |
T |
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| Q |
302 |
ttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctacc |
357 |
Q |
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|||| || |||||||||||||||||| ||||||| || ||||||||||||||||| |
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| T |
36935314 |
ttcatgctttcattatcttcatcacagtatcattgttcagttccattagtgctacc |
36935369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 199 - 356
Target Start/End: Complemental strand, 37069970 - 37069813
Alignment:
| Q |
199 |
ctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaa |
298 |
Q |
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| T |
37069970 |
ctcacattggtttcaacacttataatcactgcttcagtagcagcatgttttgctgttccaggtgaagcggatggaaaagcaaacaacctatgtcatgcaa |
37069871 |
T |
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| Q |
299 |
tgtttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctac |
356 |
Q |
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| T |
37069870 |
tgttccaagctttcattatcttcatcacaatatcattgttcagttccattagttctac |
37069813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 199 - 356
Target Start/End: Complemental strand, 37079730 - 37079573
Alignment:
| Q |
199 |
ctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaa |
298 |
Q |
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| T |
37079730 |
ctcacattggtttcaacccttataatcactgcttcagtagcagcatgttttgctgttccaggtgaagcggatggaaaagcaaacaacctatgtcatgcaa |
37079631 |
T |
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| Q |
299 |
tgtttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctac |
356 |
Q |
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| T |
37079630 |
tgttccatgttttcattatattcatcacaatatcattgttcagttccattagttctac |
37079573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 36971668 - 36971718
Alignment:
| Q |
208 |
gtttcaacacttataatcacagcatcagtagcagcatgttttgctgttcca |
258 |
Q |
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| T |
36971668 |
gtttcaacacttataatcactgcatcagtagcagcatgttttggtgttcca |
36971718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 36955889 - 36955941
Alignment:
| Q |
17 |
catcagaaacagaatcaaataaagaccaaaatgaagacaatgctgaagcatct |
69 |
Q |
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| T |
36955889 |
catcaaaaatagaatcagatatagaccaaaatgaagacaatgttgaagcatct |
36955941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 202 - 356
Target Start/End: Complemental strand, 12493756 - 12493602
Alignment:
| Q |
202 |
acaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaatgt |
301 |
Q |
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| T |
12493756 |
acaattgtttcaacacttataatcactgcttcagtagcagcatgtttagctgttccaggtgaagcagaaggaaaagcacacagcctatgtcatgcaatgt |
12493657 |
T |
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| Q |
302 |
ttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctac |
356 |
Q |
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| || || ||||||||||||||||||||||| || || |||||||||||||||| |
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| T |
12493656 |
tccatgctttcattatcttcatcacaatatcgttgttcagttccattagtgctac |
12493602 |
T |
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