View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_high_19 (Length: 300)
Name: NF11069_high_19
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 11308035 - 11307935
Alignment:
| Q |
19 |
gagattgtgacgtgaaaaaattgtgaagtcaaag-tgtaacttatagtatttttcacatggtaatttggtaaaataaccaaattaaatttggtatcaaat |
117 |
Q |
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|||||||||| ||||||||||||||||| || || | ||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||| |
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| T |
11308035 |
gagattgtgatgtgaaaaaattgtgaagccagagatctaacttatagtattttttacaggataatttggtaaaataaccaaattaaagttggtatcaaat |
11307936 |
T |
|
| Q |
118 |
t |
118 |
Q |
| |
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| |
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|
| T |
11307935 |
t |
11307935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 46496090 - 46496149
Alignment:
| Q |
237 |
acttttgccgctgccgttaatcataaaatcactcagatccgccattactctctgcttctc |
296 |
Q |
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||||||||||||| || |||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
46496090 |
acttttgccgctgtcggtaattgtaaaatcactcagatccgccattactctccgcttctc |
46496149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 38793497 - 38793525
Alignment:
| Q |
260 |
taaaatcactcagatccgccattactctc |
288 |
Q |
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| T |
38793497 |
taaaatcactcagatccgccattactctc |
38793525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 2198712 - 2198612
Alignment:
| Q |
19 |
gagattgtgacgtgaaaaaattgtgaagtcaaag-tgtaacttatagtatttttcacatggtaatttggtaaaataaccaaattaaatttggtatcaaat |
117 |
Q |
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| T |
2198712 |
gagattgtgatgtgaaaaaattgtgaagttagagatatagcatatagtatttttcacaagataatttggtaaaataaccaaattaaagttggtatcaaat |
2198613 |
T |
|
| Q |
118 |
t |
118 |
Q |
| |
|
| |
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|
| T |
2198612 |
t |
2198612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 10689293 - 10689193
Alignment:
| Q |
19 |
gagattgtgacgtgaaaaaattgtgaagtcaaag-tgtaacttatagtatttttcacatggtaatttggtaaaataaccaaattaaatttggtatcaaat |
117 |
Q |
| |
|
||||||| || |||||||||||||||||||| || | |||||||||||||| |||| | |||||||||||||||||||| ||||||||||| |||||||| |
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| T |
10689293 |
gagattgcgatgtgaaaaaattgtgaagtcagaggtctaacttatagtattcttcatagggtaatttggtaaaataacctaattaaatttgatatcaaat |
10689194 |
T |
|
| Q |
118 |
t |
118 |
Q |
| |
|
| |
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|
| T |
10689193 |
t |
10689193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 3697139 - 3697238
Alignment:
| Q |
19 |
gagattgtgacgtgaaaaaattgtgaagtcaaa-gtgtaacttatagtatttttcacatggtaatttggtaaaataaccaaattaaatttggtatcaaat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||||||||||||||| ||| | || || |||||||||| ||||||||||||||||||||| |
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| T |
3697139 |
gagattgtggtgtgaaaaaattgtgaagtcaaaagtctaacttatagtatttt-cactggatagttccgtaaaataacaaaattaaatttggtatcaaat |
3697237 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 3699501 - 3699600
Alignment:
| Q |
19 |
gagattgtgacgtgaaaaaattgtgaagtcaaa-gtgtaacttatagtatttttcacatggtaatttggtaaaataaccaaattaaatttggtatcaaat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||||||||||||||| ||| | || || |||||||||| ||||||||||||||||||||| |
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| T |
3699501 |
gagattgtggtgtgaaaaaattgtgaagtcaaaagtctaacttatagtatttt-cactggatagttccgtaaaataacaaaattaaatttggtatcaaat |
3699599 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 3869649 - 3869550
Alignment:
| Q |
19 |
gagattgtgacgtgaaaaaattgtgaagtcaaa-gtgtaacttatagtatttttcacatggtaatttggtaaaataaccaaattaaatttggtatcaaat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||||||||||||||| ||| | || || |||||||||| ||||||||||||||||||||| |
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| T |
3869649 |
gagattgtggtgtgaaaaaattgtgaagtcaaaagtctaacttatagtatttt-cactggatagttccgtaaaataacaaaattaaatttggtatcaaat |
3869551 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 6301894 - 6301793
Alignment:
| Q |
19 |
gagattgtgacgtgaaaaaattgtgaagtcaaag-tgtaacttatagtatttttcacatgg-taatttggtaaaataaccaaattaaatttggtatcaaa |
116 |
Q |
| |
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|||||||||| ||||||||||||||||| | || | ||||||||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||| |
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| T |
6301894 |
gagattgtgatgtgaaaaaattgtgaagctagagatctaacttatagtatttttcacaaggataatttggtaaaataatcaaattaaagttggtatcaaa |
6301795 |
T |
|
| Q |
117 |
tt |
118 |
Q |
| |
|
|| |
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|
| T |
6301794 |
tt |
6301793 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 13876179 - 13876120
Alignment:
| Q |
237 |
acttttgccgctgccgttaatcataaaatcactcagatccgccattactctctgcttctc |
296 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
13876179 |
acttttgccgctgtcggtaatcgtaaaatcactcagatccgccgttactctctgcttctc |
13876120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 15897352 - 15897400
Alignment:
| Q |
172 |
atcaactttatacacacaaagagaaca-aaaaatagaaacacaattcat |
219 |
Q |
| |
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|||||||||||||| ||||||||||| |||| |||||||||||||||| |
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|
| T |
15897352 |
atcaactttatacatccaaagagaacagaaaactagaaacacaattcat |
15897400 |
T |
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