View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_high_20 (Length: 273)
Name: NF11069_high_20
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 37792073 - 37791818
Alignment:
| Q |
1 |
ccgatggcttcaccggcagttccccctacaagacctgtttctctcggtccacaaccagatgttgaatataagccaccccagccaaatatgttgatgattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37792073 |
ccgatggcttcaccggcagttccccctacaagacctgtttctctcggtccacaaccagatgttgaatataagtcaccccagccaaatatgttgatgattc |
37791974 |
T |
|
| Q |
101 |
cacgacctggcagtattcatccacctcatgcaggaatgtcacctagaccaccattttctttgggaccaatgccaggaactgttcattcaactggaaacca |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37791973 |
cacgacctggcagtattcatccacatcatgcaggaatgtcacctagaccaccattttctttggtaccaatgccaggaactgttcattcaactggaaacca |
37791874 |
T |
|
| Q |
201 |
tttattagggcctgtttcatttccttcgccaagaatatcctctccacttccattag |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37791873 |
tttattagggcctgtttcatttccttcgccaagaatatcctctccacttccattag |
37791818 |
T |
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