View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069_high_30 (Length: 238)
Name: NF11069_high_30
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_high_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 16792263 - 16792485
Alignment:
| Q |
1 |
ctgcagcctctctctcgactacgttttccgacaccaatccttcgccacaactgcagaaaactctattcaagctctcgaaatcttcttgaatcataacatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16792263 |
ctgcagcctctctctcgactacgttttccgacaccaatccttcgccacaactgcagaaaactctattcaagctctcgaaatcttcttgaatcataacatg |
16792362 |
T |
|
| Q |
101 |
atctgacctattgaacactcttgagttccctccagctagcaaaaccattaagaatgcatcaaaggaagctctcattacttccttcattgccaatggttga |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16792363 |
atctgacctattgaacactcttgagtttcctccagctagcaaaaccattaagaatgcatcaaaggaagctctcattacttccttcattgccaatggttga |
16792462 |
T |
|
| Q |
201 |
gctctatcaactaatagtgtagt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
16792463 |
gctctatcaactaatagtgtagt |
16792485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 32735712 - 32735618
Alignment:
| Q |
114 |
aacactcttgagttccctccagctagcaaaaccattaagaatgcatcaaaggaagctctcattacttccttcattgccaatggttgagctctatc |
208 |
Q |
| |
|
||||| |||||| | || ||||| ||||||||||| | |||||| || || ||||| |||||| ||| || |||||||||||||||||||||| |
|
|
| T |
32735712 |
aacacccttgaggttccaccagcaagcaaaaccataaggaatgcgtcgaatgaagccttcattatttcttttgttgccaatggttgagctctatc |
32735618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University