View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069_high_34 (Length: 218)

Name: NF11069_high_34
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069_high_34
NF11069_high_34
[»] chr3 (1 HSPs)
chr3 (21-141)||(34948721-34948844)
[»] chr4 (2 HSPs)
chr4 (145-200)||(37029534-37029589)
chr4 (56-141)||(48292031-48292117)
[»] chr8 (3 HSPs)
chr8 (44-89)||(5726462-5726507)
chr8 (52-128)||(11630665-11630741)
chr8 (104-141)||(5726424-5726461)
[»] chr7 (3 HSPs)
chr7 (105-141)||(16650621-16650657)
chr7 (105-141)||(17624981-17625017)
chr7 (56-141)||(40066729-40066808)
[»] chr2 (1 HSPs)
chr2 (52-124)||(10376365-10376437)
[»] chr1 (1 HSPs)
chr1 (105-146)||(38114049-38114090)
[»] chr6 (1 HSPs)
chr6 (38-128)||(12798612-12798701)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 34948844 - 34948721
Alignment:
Q  21 ggaacaaaagaatgtaaaggttatattttata---tattattttggttgaagaagacaaaataaattgtcacgtggcagtggtgtatggggtggatgaat 117  Q
    |||||||||||||| ||| |||||||||||||   ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||    
T  34948844 ggaacaaaagaatggaaatgttatattttatactatattattttggttgaagaagacaaaataaattgccacatggcagtggtgtatagggtgaatgaat 34948745  T
Q  118 taaaagggtgttcatcaatcttta 141  Q
    ||||||||||||||||||||||||    
T  34948744 taaaagggtgttcatcaatcttta 34948721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 37029589 - 37029534
Alignment:
Q  145 aatttgataccacaatatcatgttgtccatcgtgtcgatttggagtaacttcaatg 200  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37029589 aatttcataccacaatatcatgttgtccatcgtgtctatttggagtaacttcaatg 37029534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 48292031 - 48292117
Alignment:
Q  56 tattttggttgaagaagacaaaataaat---tgtcacgtggcagtggtgtatggggtggatgaattaaaagggtgttcatcaatcttta 141  Q
    ||||||||||||||||||||||| |||    || ||||| ||||||||  | ||| |||||||||||||||||||||||||||||||||    
T  48292031 tattttggttgaagaagacaaaaaaaaaaactgccacgtagcagtggt--acgggatggatgaattaaaagggtgttcatcaatcttta 48292117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 5726507 - 5726462
Alignment:
Q  44 tattttatatattattttggttgaagaagacaaaataaattgtcac 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5726507 tattttatatattattttggttgaagaagacaaaataaattgtcac 5726462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 11630665 - 11630741
Alignment:
Q  52 atattattttggttgaagaagacaaaataaattgtcac-gtggcagtggtgtatggggtggatgaattaaaagggtgt 128  Q
    ||||||||||| ||||| ||||||||| |||||| ||| |||| ||||||||| |||||||||| |||||||||||||    
T  11630665 atattattttgtttgaataagacaaaaaaaattgccacagtgg-agtggtgtaaggggtggatggattaaaagggtgt 11630741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 5726461 - 5726424
Alignment:
Q  104 tggggtggatgaattaaaagggtgttcatcaatcttta 141  Q
    |||||||  |||||||||||||||||||||||||||||    
T  5726461 tggggtgattgaattaaaagggtgttcatcaatcttta 5726424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 16650621 - 16650657
Alignment:
Q  105 ggggtggatgaattaaaagggtgttcatcaatcttta 141  Q
    |||||||||||||||||||||||||||||||||||||    
T  16650621 ggggtggatgaattaaaagggtgttcatcaatcttta 16650657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 17624981 - 17625017
Alignment:
Q  105 ggggtggatgaattaaaagggtgttcatcaatcttta 141  Q
    |||||||||||||||||||||||||||||||||||||    
T  17624981 ggggtggatgaattaaaagggtgttcatcaatcttta 17625017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 40066729 - 40066808
Alignment:
Q  56 tattttggttgaagaagacaaaataaattgtcacgtggcagtggtgtatggggtggatgaattaaaagggtgttcatcaatcttta 141  Q
    ||||||||||||||||    ||| ||| || ||||| ||||||||  |||| ||||||||||||||||| ||||||||||||||||    
T  40066729 tattttggttgaagaa----aaaaaaaatgccacgtagcagtggt--atggagtggatgaattaaaaggttgttcatcaatcttta 40066808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 10376365 - 10376437
Alignment:
Q  52 atattattttggttgaagaagacaaaataaattgtcac-gtggcagtggtgtatggggtggatgaattaaaagg 124  Q
    ||||||||||| ||||| ||||||||| |||||| ||| |||| ||||||||| |||||||||| |||||||||    
T  10376365 atattattttgtttgaataagacaaaaaaaattgccacagtgg-agtggtgtaaggggtggatggattaaaagg 10376437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 38114049 - 38114090
Alignment:
Q  105 ggggtggatgaattaaaagggtgttcatcaatctttatccaa 146  Q
    |||||||||||||||||||||||||||||||| |||| ||||    
T  38114049 ggggtggatgaattaaaagggtgttcatcaatttttacccaa 38114090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 12798612 - 12798701
Alignment:
Q  38 aggttatattttatatattattttggttgaagaagacaaaataaa-ttgtcac-gtggcagtggtgtatggggtggatgaattaaaagggtgt 128  Q
    ||||||||||||||||  ||||||| ||||| ||||||||| ||| ||||||  |||| ||||||||| ||| |||||| |||||||||||||    
T  12798612 aggttatattttatat--tattttgtttgaataagacaaaaaaaaattgtcatagtgg-agtggtgtaagggatggatggattaaaagggtgt 12798701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University