View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069_low_11 (Length: 421)
Name: NF11069_low_11
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 48 - 403
Target Start/End: Complemental strand, 55174240 - 55173885
Alignment:
| Q |
48 |
actacatccatgatcattacaataatataacaacaacaaatgatggattcataagattgattgatgttgtacttttcaggcgtggccagacattcttgat |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55174240 |
actacatccatgatcattacaataatataataacaacagatgatggattcataagattgattgatgttgtacttttcaggcgtggccagacattcttgat |
55174141 |
T |
|
| Q |
148 |
aaggcaagacatggaggtttgaacgttattcaaacttacgtgttttggaacgctcatgagccagagcaaggcaaggtatatgattaattaaatgacaaaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55174140 |
aaggcaagacatggaggtttgaacgttattcaaacttacgtgttttggaacgctcatgagccagagcaaggcaaggtatatgattaattaaatgacaaaa |
55174041 |
T |
|
| Q |
248 |
ttaatctcttgactcaatgtatggaacatttgattgtaaacttaatttgtttatcaaacgttatgcagttcaactttgaaggcaacaatgatttggtgaa |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
55174040 |
ttaatctcttgactcaatgtatggaacatttgattgtaaacttaatttgtttatcaaacgttatgcagttcaattttgaaggcaacaatgatttggtgaa |
55173941 |
T |
|
| Q |
348 |
gttcattaggcttgttcaatcaaaaggaatgtacgtgaccctcagggttggaccgt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55173940 |
gttcattaggcttgttcaatcaaaaggaatgtacgtgaccctcagggttggaccgt |
55173885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University