View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069_low_15 (Length: 363)

Name: NF11069_low_15
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069_low_15
NF11069_low_15
[»] chr6 (8 HSPs)
chr6 (17-358)||(2600888-2601232)
chr6 (17-345)||(2573412-2573740)
chr6 (154-345)||(2619167-2619358)
chr6 (149-349)||(2645804-2646004)
chr6 (121-349)||(2677994-2678222)
chr6 (154-349)||(2585472-2585667)
chr6 (140-339)||(2431993-2432192)
chr6 (218-349)||(2448018-2448149)
[»] chr8 (1 HSPs)
chr8 (246-345)||(33801858-33801957)
[»] chr4 (1 HSPs)
chr4 (246-345)||(53664676-53664775)
[»] chr7 (1 HSPs)
chr7 (171-345)||(17874177-17874351)


Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 2600888 - 2601232
Alignment:
Q  17 aaatagaaatgaaaaaattgaattaatctgcatttgagggtgtctttaacacata--gagacggacttcatgtttttctgtctcttaacttttcgccgtt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||| ||||||||||||||||||| ||||    
T  2600888 aaatagaaatgaaaaaattgaattaatctgcatttgagggtgtcttcaacacatatagagacggacttcatgtttatctgtctcttaacttttcgtcgtt 2600987  T
Q  115 gattcaaatttttcttagtattattaattgaatggaatgagataaagggttaaagtataattacaa-tccaccaattgcgattgaaactccaactgaata 213  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  2600988 gattcaaatttttctcagtattattaattgaatggaatgagataaagggttaaagtataattaaaaatccaccaattgcgattgaaactccaactgaata 2601087  T
Q  214 aacggtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcct 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2601088 aacggtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcct 2601187  T
Q  314 aagcctttggctaagccttgtttcaatcccaacttctgtgctcct 358  Q
    |||||||| ||||||||||||||||||||||||||| ||| ||||    
T  2601188 aagcctttagctaagccttgtttcaatcccaacttcagtggtcct 2601232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 2573412 - 2573740
Alignment:
Q  17 aaatagaaatgaaaaaattgaattaatctgcatttgagggtgtctttaacacatagagacggacttcatgtttttctgtctcttaacttttcgccgttga 116  Q
    ||||||||||||||||||||||||| | |||| || | | ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| || |||    
T  2573412 aaatagaaatgaaaaaattgaattactatgcaatt-atgatgtctctaacacatagagacggacttcatgtttttttgtatcttaacttttcgtcgctga 2573510  T
Q  117 ttcaaattttt-cttagtattattaattgaatggaatgagataaagggttaaagtataattacaatccaccaattgcgattgaaactccaactgaataaa 215  Q
    ||||| ||||| || | || |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||  ||||||| ||||||||||||||    
T  2573511 ttcaacttttttctgaatagtattaattgaatggaatgagataaagggttaaagtataattacaatcctccaagtgttattgaaattccaactgaataaa 2573610  T
Q  216 cggtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaa 315  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||     
T  2573611 cagtaccacctttagcaccatgatacatgaccattctgctaccataatatgacatcaaagaccatacagcaaaaacaagaccattgcttcctatgcctat 2573710  T
Q  316 gcctttggctaagccttgtttcaatcccaa 345  Q
    |||||| || ||||||||||||||||||||    
T  2573711 gcctttcgccaagccttgtttcaatcccaa 2573740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 154 - 345
Target Start/End: Complemental strand, 2619358 - 2619167
Alignment:
Q  154 agataaagggttaaagtataattacaatccaccaattgcgattgaaactccaactgaataaacggtaccacctttagcaccatgatacatgaccattctg 253  Q
    |||| |||||| || ||||| |||| ||||||||| ||| ||||||  |||||| | | | || ||||||||||||||||||||||||||||||||||||    
T  2619358 agatgaagggtaaaggtatacttacgatccaccaagtgctattgaatatccaacagcaaatacagtaccacctttagcaccatgatacatgaccattctg 2619259  T
Q  254 ctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaagcctttggctaagccttgtttcaatcccaa 345  Q
    ||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2619258 ctaccataataggccatcaaagaccatacagcaaaaagaagaccattgcttcctatgcctaagcctttagctaagccttgtttcaatcccaa 2619167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 149 - 349
Target Start/End: Original strand, 2645804 - 2646004
Alignment:
Q  149 gaatgagataaagggttaaagtataattacaatccaccaattgcgattgaaactccaactgaataaacggtaccacctttagcaccatgatacatgacca 248  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| |  ||| |||||||   |||||| |||||||||||||||||||||||||||||||    
T  2645804 gaatgagataaagggtaaaagtataattacaatccaccaagtgctaaggaagctccaacattataaacagtaccacctttagcaccatgatacatgacca 2645903  T
Q  249 ttctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaagcctttggctaagccttgtttcaatcccaactt 348  Q
    |||||||||||||||| | ||| || ||   ||  |||||||||| |||||||||||||||| | || ||||| ||||||||||||||||||||||||||    
T  2645904 ttctgctaccataataagtcataaaagaagctattgcaaaaacaacaccattgcttcctatggcaaaacctttagctaagccttgtttcaatcccaactt 2646003  T
Q  349 c 349  Q
    |    
T  2646004 c 2646004  T

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Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 121 - 349
Target Start/End: Original strand, 2677994 - 2678222
Alignment:
Q  121 aatttttcttagtattattaattgaatggaatgagataaagggttaaagtataattacaatccaccaattgcgattgaaactccaactgaataaacggta 220  Q
    |||||||| || || ||| ||||||||  ||||| | ||||||| ||  |||| |||||||||||||| ||| | |||  ||||||| | | | || |||    
T  2677994 aatttttcataatagtatgaattgaataaaatgatacaaagggtaaagatatacttacaatccaccaagtgctaatgatgctccaacagcaaatacagta 2678093  T
Q  221 ccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaagcctt 320  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||  |||||||||| |||||||||||||||| | |||||||    
T  2678094 ccacctttagcaccatgatacatgaccattctgctaccataaaaggacataaaggaccatatagcaaaaacaacaccattgcttcctatggccaagcctt 2678193  T
Q  321 tggctaagccttgtttcaatcccaacttc 349  Q
    | |||||||||||||||||||||||||||    
T  2678194 tagctaagccttgtttcaatcccaacttc 2678222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 154 - 349
Target Start/End: Complemental strand, 2585667 - 2585472
Alignment:
Q  154 agataaagggttaaagtataattacaatccaccaattgcgattgaaactccaactgaataaacggtaccacctttagcaccatgatacatgaccattctg 253  Q
    |||| |||||| || ||||| |||| ||||| ||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2585667 agatgaagggtaaaggtatacttacgatccagcaattgctaatgaaaatccaactgaataaacggtaccacctttagcaccatgatacataaccattctg 2585568  T
Q  254 ctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaagcctttggctaagccttgtttcaatcccaacttc 349  Q
    ||||||||||| | ||| || |||||||  ||||||  || |||||||||||||||| | ||||| || ||||| |||||||||||||||||||||    
T  2585567 ctaccataatatgccataaaagaccatatagcaaaattaacaccattgcttcctatggccaagcccttagctaaaccttgtttcaatcccaacttc 2585472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 140 - 339
Target Start/End: Complemental strand, 2432192 - 2431993
Alignment:
Q  140 aattgaatggaatgagataaagggttaaagtataattacaatccaccaattgcgattgaaactccaactgaataaacggtaccacctttagcaccatgat 239  Q
    ||||||| |||||||||||||||||   |||||| |||||||||||||||||| | ||  |||||||||  | | || ||||| ||||||||||||||||    
T  2432192 aattgaacggaatgagataaagggtattagtatacttacaatccaccaattgctaatgttactccaactacaaatactgtaccgcctttagcaccatgat 2432093  T
Q  240 acatgaccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaagcctttggctaagccttgtttcaa 339  Q
    ||||||||||| |||||||||| ||| | || || |||||||  ||| | |||| |||||||||||||||| |||||||||| || || |||||||||||    
T  2432092 acatgaccattatgctaccatagtagaatattaaagaccatatagcatagacaacaccattgcttcctatggctaagcctttagccaaaccttgtttcaa 2431993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 218 - 349
Target Start/End: Complemental strand, 2448149 - 2448018
Alignment:
Q  218 gtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaagc 317  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||  |||||     | | |||| | |||||||||||||  ||||||    
T  2448149 gtaccacctttagcaccatgatacatgaccattctactaccataatatgacataaaacaccattgaatatacacaatagcattgcttcctatagctaagc 2448050  T
Q  318 ctttggctaagccttgtttcaatcccaacttc 349  Q
    ||||  | ||||||||||||||||||||||||    
T  2448049 ctttaaccaagccttgtttcaatcccaacttc 2448018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 246 - 345
Target Start/End: Complemental strand, 33801957 - 33801858
Alignment:
Q  246 ccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaagcctttggctaagccttgtttcaatcccaa 345  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  33801957 ccattctgctaccataataggccatcaaagaccatacagcaaaaagaagaccattgcttcctatgcttaagcctttagctaagccttgtttcaatcccaa 33801858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 246 - 345
Target Start/End: Original strand, 53664676 - 53664775
Alignment:
Q  246 ccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaagcctttggctaagccttgtttcaatcccaa 345  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||| |||||||||| ||||||||| |||||||||||||||||||||||    
T  53664676 ccattctgctaccataataggccatcaaagaccatacagcaaaaagaagaccattacttcctatgcttaagcctttagctaagccttgtttcaatcccaa 53664775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 345
Target Start/End: Original strand, 17874177 - 17874351
Alignment:
Q  171 ataattacaatccaccaattgcgattgaaactccaactgaataaacggtaccacctttagcaccatgatacatgaccattctgctaccataataggacat 270  Q
    ||||||||||||||||||  |  || ||  ||||||||| | |||| || || |||||||||||||||||||| |||| | |||||||||||||| ||||    
T  17874177 ataattacaatccaccaacagttatggatgctccaactgcaaaaactgtccctcctttagcaccatgatacataaccaatttgctaccataatagcacat 17874276  T
Q  271 caacgaccatacggcaaaaacaagaccattgcttcctatgcctaagcctttggctaagccttgtttcaatcccaa 345  Q
     || ||||| |  ||||| |||| |||||||||||| ||  |||| ||||| ||||| |||||||| || |||||    
T  17874277 gaaggaccaaattgcaaagacaacaccattgcttccaattgctaaacctttagctaatccttgttttaaacccaa 17874351  T

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