View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_low_16 (Length: 362)
Name: NF11069_low_16
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 24 - 350
Target Start/End: Original strand, 3018240 - 3018559
Alignment:
| Q |
24 |
aacgtagaattgaattatcctatctagcttcagaaaattcatgtgaatttgggacatgggaaactagaatgcagcatatgctcaataacttttacaattt |
123 |
Q |
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| T |
3018240 |
aacgtagaattgaattatcctatctagcttca-----ttcatgtcaatttgggacatgggaaactagaatgcagcatatgctcaataacttttacaattt |
3018334 |
T |
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| Q |
124 |
cagtgttaccaaaagaactaaaatgagtgtttgctctttaaaattgtgtcgcattggaacatcctaaagcctaagctgtagagctagtga-nnnnnnnng |
222 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3018335 |
cagtgtcaccaaaagaactaaaatgagtgtttgctctttaaaattgtgtcgcattggaacatcctaaagcctaagctgtagagctagtgatttttttttg |
3018434 |
T |
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| Q |
223 |
tgaaacatagtaatctaataatatcaagccaatcattgtataactaatgatttagaggctttggtaatttccacactaaattattcatgatgataaattc |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3018435 |
tgaaacatagtaatctaataatatcaagccaatcattgtataactaatgatttagaggctttggtaatttccacactaa---attcatgatgataaattc |
3018531 |
T |
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| Q |
323 |
gatcattgatatttccatgtcacaggtt |
350 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
3018532 |
gatcattgatatttccatgtcacaggtt |
3018559 |
T |
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