View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_low_19 (Length: 310)
Name: NF11069_low_19
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 3 - 300
Target Start/End: Original strand, 44614810 - 44615107
Alignment:
| Q |
3 |
aggagtagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgattgtgttttgttaggcttttaatttcaagtttgagagtttttgtat |
102 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44614810 |
aggaatagcaaaggatcaataaatgacagtttttgttaaaactttagtgtttgattgtgttttgttaggcttttaatttcaattttgagagtttttgtat |
44614909 |
T |
|
| Q |
103 |
ggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactttagtgtgtgactgtgttttgttatggcttctgctatcaatttaat |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44614910 |
ggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactttagtgtgtgattgtgttttgttatggcttctgctatcaatttaat |
44615009 |
T |
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| Q |
203 |
aatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgacttaaatattatttattagcacaattattcacccacttatgcctttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44615010 |
aatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgacttaaatattctttattagcacaattattcacccacttatgcctttg |
44615107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 3 - 300
Target Start/End: Complemental strand, 44793759 - 44793462
Alignment:
| Q |
3 |
aggagtagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgattgtgttttgttaggcttttaatttcaagtttgagagtttttgtat |
102 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |
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| T |
44793759 |
aggaatagcaaaggatcaataaatgacagtttttgttaaaactttagtgtttgattgtgttttgtttggctttcaatttcaattttgagagtttttgtat |
44793660 |
T |
|
| Q |
103 |
ggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactttagtgtgtgactgtgttttgttatggcttctgctatcaatttaat |
202 |
Q |
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| T |
44793659 |
ggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactttagtgtgtgattgtgttttgttatggcttctgctatcaatttaat |
44793560 |
T |
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| Q |
203 |
aatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgacttaaatattatttattagcacaattattcacccacttatgcctttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44793559 |
aatgtaataaatcctccaaacataacaaagaattttaagagtcatcagtgacttaaatattctttattagcacaattattcacccacttatgcctttg |
44793462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 147
Target Start/End: Complemental strand, 44789904 - 44789760
Alignment:
| Q |
3 |
aggagtagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgattgtgttttgttaggcttttaatttcaagtttgagagtttttgtat |
102 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||| |
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| T |
44789904 |
aggaatagcaaaggatcaataaatgacagtttttgttaaaactttagtgtttgattgtgttttgtttggctttcaatttcaagtttgacagtttttgtat |
44789805 |
T |
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| Q |
103 |
ggaaatcttctgctatcatgttattaatgtaataaatggaatttt |
147 |
Q |
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| T |
44789804 |
gaaaatcttctgctatcgagtgattaatgtaataaatggattttt |
44789760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 44146823 - 44146980
Alignment:
| Q |
48 |
agtgtttgattgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaatttt |
147 |
Q |
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|||||||||||||||||| || ||||| ||||||||| |||| |||||||||||||||||||||||| ||| |||| |||||||||| ||||| |||| |
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| T |
44146823 |
agtgtttgattgtgtttttttctgctttcaatttcaaggttgacagtttttgtatggaaatcttctgccatcgagttaataatgtaatagatggagtttt |
44146922 |
T |
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| Q |
148 |
gttaaaactttagtgtgtgactgtgttttgttatggcttctgctatcaatttaataat |
205 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||| |||| | |||||||| |
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| T |
44146923 |
gttaaaattttagtgcttgactgtgttttgttatggcttctgttatcgagttaataat |
44146980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 44783517 - 44783372
Alignment:
| Q |
48 |
agtgtttgattgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaatttt |
147 |
Q |
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|||||||||||||||||| || |||| ||||||||||||| ||||||||| |||||||||||||||| |||| |||||||||||||||| || | |
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| T |
44783517 |
agtgtttgattgtgtttttttctactttcaatttcaagtttggtgatttttgtattgaaatcttctgctatcgagttaataatgtaataaatggacttct |
44783418 |
T |
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| Q |
148 |
gttaaaactttagtgtgtgactgtgttttgttatggcttctgctat |
193 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44783417 |
gttaaaactttagtgtgtgactaggttttgttatggcttctgctat |
44783372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 44789743 - 44789646
Alignment:
| Q |
131 |
gtaataaatggaattttgttaaaactttagtgtgtgactgtgttttgttatggcttctgctatcaatttaataatgtaataaatcctccaaacataacaa |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
44789743 |
gtaataaatggaattttgttaaaactttagtgtgtgactgtgctt--ttatggcttctgct-tcaatttaataatgtaatacatcctccaaacataacaa |
44789647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 29505283 - 29505175
Alignment:
| Q |
3 |
aggagtagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgattgtgttttgttaggcttttaatttcaagtttgagagtttttgtat |
102 |
Q |
| |
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|||| ||| ||||||| ||||||| ||| ||||||||| |||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||||||| |
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| T |
29505283 |
aggaataggaaaggatgaataaatgaca--ttttgttaagactttagtgttttattgtgttt-gttaggctttcaatttcaagtttgacagtttttgtat |
29505187 |
T |
|
| Q |
103 |
ggaaatcttctg |
114 |
Q |
| |
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|||||||||||| |
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| T |
29505186 |
ggaaatcttctg |
29505175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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