View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069_low_2 (Length: 680)

Name: NF11069_low_2
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069_low_2
NF11069_low_2
[»] scaffold0110 (4 HSPs)
scaffold0110 (18-634)||(13061-13670)
scaffold0110 (18-634)||(20798-21407)
scaffold0110 (18-352)||(29918-30254)
scaffold0110 (353-478)||(30224-30349)
[»] chr1 (19 HSPs)
chr1 (477-680)||(5939623-5939825)
chr1 (499-678)||(15456700-15456878)
chr1 (474-680)||(28522966-28523171)
chr1 (536-680)||(50011762-50011907)
chr1 (477-679)||(45370715-45370919)
chr1 (475-680)||(1834750-1834955)
chr1 (482-680)||(47677022-47677220)
chr1 (500-667)||(35718982-35719149)
chr1 (475-680)||(12705326-12705533)
chr1 (505-667)||(26991921-26992080)
chr1 (474-679)||(27163173-27163374)
chr1 (477-559)||(30627391-30627472)
chr1 (510-648)||(30796562-30796701)
chr1 (625-680)||(46688845-46688899)
chr1 (477-679)||(13004224-13004418)
chr1 (577-679)||(39092820-39092922)
chr1 (606-679)||(18898275-18898348)
chr1 (627-679)||(31437064-31437116)
chr1 (620-679)||(52898403-52898462)
[»] chr2 (16 HSPs)
chr2 (472-679)||(37847195-37847402)
chr2 (480-679)||(21848576-21848775)
chr2 (477-680)||(25749966-25750170)
chr2 (535-679)||(39446159-39446303)
chr2 (477-648)||(3703897-3704071)
chr2 (488-667)||(36749735-36749911)
chr2 (474-679)||(2969198-2969403)
chr2 (594-679)||(19140982-19141067)
chr2 (477-641)||(12016085-12016248)
chr2 (624-680)||(27957498-27957554)
chr2 (499-559)||(28967837-28967897)
chr2 (608-680)||(42029670-42029742)
chr2 (597-679)||(12671677-12671759)
chr2 (533-679)||(11916292-11916429)
chr2 (477-558)||(14332596-14332676)
chr2 (607-680)||(12184619-12184692)
[»] chr7 (13 HSPs)
chr7 (545-680)||(19735503-19735638)
chr7 (477-667)||(583824-584013)
chr7 (477-680)||(17503332-17503534)
chr7 (477-680)||(17549680-17549882)
chr7 (477-680)||(2842312-2842519)
chr7 (477-558)||(8515787-8515869)
chr7 (477-559)||(48293850-48293932)
chr7 (499-559)||(48557738-48557798)
chr7 (477-558)||(8488978-8489060)
chr7 (626-676)||(48767475-48767525)
chr7 (474-574)||(8352513-8352614)
chr7 (606-670)||(27399428-27399492)
chr7 (577-648)||(36452258-36452330)
[»] chr4 (19 HSPs)
chr4 (477-667)||(51175280-51175469)
chr4 (473-680)||(37450621-37450825)
chr4 (473-670)||(31767928-31768124)
chr4 (482-680)||(56397178-56397375)
chr4 (477-636)||(4711248-4711403)
chr4 (498-667)||(38068284-38068452)
chr4 (473-679)||(38067602-38067807)
chr4 (477-667)||(12191279-12191467)
chr4 (477-559)||(44992018-44992099)
chr4 (499-680)||(40445546-40445724)
chr4 (594-679)||(36622281-36622366)
chr4 (499-664)||(45832236-45832400)
chr4 (499-670)||(56228562-56228727)
chr4 (474-588)||(39718868-39718982)
chr4 (501-561)||(32409313-32409373)
chr4 (621-679)||(27064573-27064631)
chr4 (621-679)||(27085677-27085735)
chr4 (48-97)||(31639059-31639108)
chr4 (626-670)||(36456510-36456554)
[»] chr3 (17 HSPs)
chr3 (475-679)||(28131092-28131296)
chr3 (475-667)||(19610900-19611091)
chr3 (481-679)||(1559905-1560103)
chr3 (477-675)||(1292033-1292230)
chr3 (594-680)||(25701643-25701729)
chr3 (544-679)||(38585784-38585919)
chr3 (475-648)||(1151987-1152160)
chr3 (479-679)||(33428592-33428792)
chr3 (481-680)||(3935876-3936073)
chr3 (479-641)||(35540547-35540709)
chr3 (487-679)||(32551926-32552113)
chr3 (477-680)||(1292318-1292516)
chr3 (594-680)||(32721945-32722031)
chr3 (594-680)||(47142675-47142761)
chr3 (604-680)||(48098288-48098364)
chr3 (479-648)||(55222156-55222325)
chr3 (499-559)||(10183041-10183100)
[»] chr6 (8 HSPs)
chr6 (548-680)||(29465385-29465515)
chr6 (477-679)||(6811284-6811486)
chr6 (536-680)||(31766511-31766652)
chr6 (605-679)||(10373875-10373949)
chr6 (610-680)||(27753197-27753267)
chr6 (477-557)||(17096581-17096661)
chr6 (594-679)||(28188005-28188089)
chr6 (594-679)||(24326049-24326134)
[»] chr8 (11 HSPs)
chr8 (469-676)||(45251232-45251436)
chr8 (474-589)||(5423308-5423423)
chr8 (477-679)||(12796294-12796494)
chr8 (477-670)||(1581284-1581476)
chr8 (488-679)||(29637882-29638073)
chr8 (537-679)||(13281957-13282097)
chr8 (535-679)||(22800695-22800837)
chr8 (605-679)||(7177375-7177449)
chr8 (475-679)||(41437968-41438171)
chr8 (479-559)||(12532582-12532662)
chr8 (544-667)||(14523317-14523439)
[»] scaffold0086 (1 HSPs)
scaffold0086 (477-675)||(33569-33766)
[»] chr5 (7 HSPs)
chr5 (542-679)||(2552655-2552790)
chr5 (605-679)||(12883523-12883597)
chr5 (499-667)||(15958862-15959029)
chr5 (481-560)||(564979-565057)
chr5 (473-518)||(2552221-2552266)
chr5 (499-650)||(8517089-8517235)
chr5 (606-679)||(4395654-4395727)
[»] scaffold0007 (1 HSPs)
scaffold0007 (535-679)||(175210-175354)


Alignment Details
Target: scaffold0110 (Bit Score: 544; Significance: 0; HSPs: 4)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 18 - 634
Target Start/End: Original strand, 13061 - 13670
Alignment:
Q  18 aaagattttgcggattatgcagatttttgtttcaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13061 aaagattttgcggattatgcagatttttgtttcaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg 13160  T
Q  118 gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13161 gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa 13260  T
Q  218 tttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttttagattaa--gtgtgtttagat 315  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  13261 tttgatattgtcacatgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgattcatttttagattaagtgtgtgtttagat 13360  T
Q  316 tatccgtgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaactacatttggaagcttca 415  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  13361 tatccatgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaactacattttgaagcttca 13460  T
Q  416 acaaaatcacaaggtgcaactgtgatttcgtcaaactcgatttgattttcatcatgcactaagagcatctccaatgggagtttcttacttaacaaggacc 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13461 acaaaatcacaaggtgcaactgtgatttcgtcaaactcgatttgattttcatcatgcactaagagcatctccaatgggagttccttacttaacaaggacc 13560  T
Q  516 acttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgg 615  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||         ||||||||||||||    
T  13561 gcttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaattatgtaaggacat---------tgggcaactaacgg 13651  T
Q  616 gtcacacgtgtaaaagaag 634  Q
    |||||||||||||||||||    
T  13652 gtcacacgtgtaaaagaag 13670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 18 - 634
Target Start/End: Original strand, 20798 - 21407
Alignment:
Q  18 aaagattttgcggattatgcagatttttgtttcaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20798 aaagattttgcggattatgcagatttttgtttcaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg 20897  T
Q  118 gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20898 gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa 20997  T
Q  218 tttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttttagattaa--gtgtgtttagat 315  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  20998 tttgatattgtcacatgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgattcatttttagattaagtgtgtgtttagat 21097  T
Q  316 tatccgtgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaactacatttggaagcttca 415  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  21098 tatccatgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaactacattttgaagcttca 21197  T
Q  416 acaaaatcacaaggtgcaactgtgatttcgtcaaactcgatttgattttcatcatgcactaagagcatctccaatgggagtttcttacttaacaaggacc 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21198 acaaaatcacaaggtgcaactgtgatttcgtcaaactcgatttgattttcatcatgcactaagagcatctccaatgggagttccttacttaacaaggacc 21297  T
Q  516 acttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgg 615  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||         ||||||||||||||    
T  21298 gcttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaattatgtaaggacat---------tgggcaactaacgg 21388  T
Q  616 gtcacacgtgtaaaagaag 634  Q
    |||||||||||||||||||    
T  21389 gtcacacgtgtaaaagaag 21407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 29918 - 30254
Alignment:
Q  18 aaagattttgcggattatgcagatttttgtttcaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg 117  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||    
T  29918 aaagattttgcggattatgcagatttttgttttaagacatttggagacagagttaagaattggatgaccttcaatgaaccaagagttgttgctgcacttg 30017  T
Q  118 gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa 217  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  30018 gttatgataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctggaaattcaggaactgagccttatactgtagctcacaa 30117  T
Q  218 tttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttttagattaag--tgtgtttagat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||  ||||||| |||    
T  30118 tttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaatattagtattttgattcgtttttagattaagtatgtgtttggat 30217  T
Q  316 tatccgtgagtttgctagaatcacgatgtgtcatagt 352  Q
    || | |||||||||  ||| ||| |||||| ||||||    
T  30218 tagcagtgagtttgtcagagtcatgatgtgccatagt 30254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 353 - 478
Target Start/End: Original strand, 30224 - 30349
Alignment:
Q  353 tgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaactacatttggaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaact 452  Q
    ||||||||||| | ||| ||||||||||| |||||| | ||||||||||| || | |||||||||||| ||||| |||||||||||||||||||||||||    
T  30224 tgagtttgtcagagtcatgatgtgccatagtgatttaggcaaaaactacactttgcagcttcaacaaagtcacatggtgcaactgtgatttcgtcaaact 30323  T
Q  453 cgatttgattttcatcatgcactaag 478  Q
     ||| ||||| | || ||||||||||    
T  30324 tgatgtgattcttattatgcactaag 30349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 477 - 680
Target Start/End: Original strand, 5939623 - 5939825
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 576  Q
    |||||||||| |||||| ||| |||||||||||||||||||| |||||||| ||| | |||||| |||||||||||||||||| |||| | |||||||      
T  5939623 agagcatctctaatgggggttccttacttaacaaggaccactccccattaaggaccccccattggaggaagaaaaaatgagtccctataaagcaacggc- 5939721  T
Q  577 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 676  Q
    ||||||| ||||||   ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  5939722 aactatacaaggaccctctctctcctgggcaactaacgggccccacgtgtaaaagaagtaataaaatatgtactggttggtcccacttgcagaagaagta 5939821  T
Q  677 ataa 680  Q
    ||||    
T  5939822 ataa 5939825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 499 - 678
Target Start/End: Original strand, 15456700 - 15456878
Alignment:
Q  499 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctc 598  Q
    |||||||||||||||||||| ||| |||| ||| | ||||||||||| |||||| |||||| |||||| ||||||   ||||||||||||||   |||||    
T  15456700 cttacttaacaaggaccactccccgttaaggactc-ccattgaaggaggaaaaattgagtccctattaagcaacgaacaactatataaggaccccctctc 15456798  T
Q  599 tcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaat 678  Q
    || |||| ||||||| |||| ||| | ||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  15456799 tcctgggtaactaactggtcccacatttaaaagaagtaataaaatatgtattagttggtcccacttgcaaaagaggtaat 15456878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 474 - 680
Target Start/End: Complemental strand, 28523171 - 28522966
Alignment:
Q  474 ctaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacg 573  Q
    ||||||||||||||||| |   || |||||||||||||||| | |   | |||| ||  ||||||||||| |||||||||||||||| ||||| ||||||    
T  28523171 ctaagagcatctccaattgagattccttacttaacaaggactattctacgttaaggaacctccattgaagaaagaaaaaatgagtctttattaagcaacg 28523072  T
Q  574 gggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaa 673  Q
     | |||||||||| ||| | ||||||| | ||||||||||| | | ||||||||||||||||||||||||||||| |  ||| |  ||||||||||||||    
T  28523071 agcaactatataatgacct-ctctctcttaggcaactaacgagccccacgtgtaaaagaagtaataaaatatgtactaattgatatcacttgcaaaagaa 28522973  T
Q  674 gtaataa 680  Q
    |||||||    
T  28522972 gtaataa 28522966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 536 - 680
Target Start/End: Complemental strand, 50011907 - 50011762
Alignment:
Q  536 cattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagt 635  Q
    |||||||| |||||||||||||||| ||||| |||||    ||||||||||||||    |||||||||| ||||||||||||| |||| |||||||||||    
T  50011907 cattgaagaaagaaaaaatgagtctttattaagcaacatacaactatataaggac----tctctcatggacaactaacgggtcgcacgcgtaaaagaagt 50011812  T
Q  636 aataaaatatgta-----ttggttggtcccacttgcaaaagaagtaataa 680  Q
    |||||||||||||     ||||||||| ||||||||||||||||||||||    
T  50011811 aataaaatatgtactggtttggttggtaccacttgcaaaagaagtaataa 50011762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 477 - 679
Target Start/End: Original strand, 45370715 - 45370919
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 576  Q
    ||||||||||||||||||| | |||| ||| |||||| |||| ||| |||| ||| |||||||| |||||||||||||||||||| |||| | |||        
T  45370715 agagcatctccaatgggaggtccttatttaccaaggatcactccccgttaaggactctccattggaggaagaaaaaatgagtctccattaaggaacatat 45370814  T
Q  577 aactatataagga-cat-gctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaag 674  Q
    |||| |||||||| |||  ||||||| | ||||||||||||||| ||||| |||||||||||||||||| |||| |   | ||||||||| | |||||||    
T  45370815 aactgtataaggatcatctctctctcctaggcaactaacgggtcccacgtttaaaagaagtaataaaatttgtactatgttgtcccacttactaaagaag 45370914  T
Q  675 taata 679  Q
    |||||    
T  45370915 taata 45370919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 475 - 680
Target Start/End: Original strand, 1834750 - 1834955
Alignment:
Q  475 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgg 574  Q
    |||||||||||| ||||||   | |||||||||||||||||||| ||| |||| ||| |||||||  |||||||||||| ||||| |  ||| | |||||    
T  1834750 taagagcatctctaatggggagtccttacttaacaaggaccactccccgttaaggaccctccattagaggaagaaaaaacgagtccccgttaaggaacgg 1834849  T
Q  575 ggaactatataagga-catgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaaga 672  Q
      ||||||||||||| ||| ||||||||| || |||||||||||| ||||| ||||| |||||||||||  |||| |  ||||||||||||||| ||||     
T  1834850 acaactatataaggatcat-ctctctcattggtaactaacgggtcccacgtttaaaa-aagtaataaaacgtgtactatttggtcccacttgcataaagg 1834947  T
Q  673 agtaataa 680  Q
    ||||||||    
T  1834948 agtaataa 1834955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 482 - 680
Target Start/End: Complemental strand, 47677220 - 47677022
Alignment:
Q  482 atctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaacta 581  Q
    |||| ||||||||| | ||||||||||||||| |||| ||  ||||  || |||||||| ||||||||||||||||||| | ||| | |||||  |||||    
T  47677220 atcttcaatgggaggtccttacttaacaaggatcactccctgttaagaaccctccattggaggaagaaaaaatgagtctatgttaaggaacggtcaacta 47677121  T
Q  582 tataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataa 680  Q
    |||||||||   ||||||| |||| ||||||||| || ||||| ||||| | |||||||||| |||| |  |||||| || ||||| |||||||||||||    
T  47677120 tataaggactctctctctcttgggtaactaacggatcccacgtttaaaa-aggtaataaaatgtgtactatttggtctcatttgcataaagaagtaataa 47677022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 500 - 667
Target Start/End: Complemental strand, 35719149 - 35718982
Alignment:
Q  500 ttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggac---atgctc 596  Q
    ||||||||||||||||||| ||| |||| ||| |||||||| |||||||||||||||||| |||||| | |||    ||||||||||||||   || |||    
T  35719149 ttacttaacaaggaccactccccgttaaggaccctccattggaggaagaaaaaatgagtcactattaaggaacatacaactatataaggaccctat-ctc 35719051  T
Q  597 tctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 667  Q
    |||| |||| |||||||||||| ||||| ||||| |||||| ||||| |||| |  |||||||||||||||    
T  35719050 tctcctgggtaactaacgggtcccacgt-taaaa-aagtaacaaaatgtgtactacttggtcccacttgca 35718982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 475 - 680
Target Start/End: Complemental strand, 12705533 - 12705326
Alignment:
Q  475 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgg 574  Q
    ||||||||||| ||||||| | |  ||||||||||| ||||||| ||| |||| ||| |||||||| ||||||||||||| |||| |  ||| | |||      
T  12705533 taagagcatcttcaatggggggtcattacttaacaatgaccactccccgttaaggaccctccattggaggaagaaaaaataagtccccgttaaggaacaa 12705434  T
Q  575 ggaactatataagga--catgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaag 671  Q
    | ||||||||||| |  |   ||||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||| |  |||||| |||||||| ||||    
T  12705433 gcaactatataagaaccctctctctctcttgggcaactaatgggtcccacgtttaaaa-aagtaataaaatgtgtactacttggtctcacttgcataaag 12705335  T
Q  672 aagtaataa 680  Q
     ||||||||    
T  12705334 gagtaataa 12705326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 505 - 667
Target Start/End: Complemental strand, 26992080 - 26991921
Alignment:
Q  505 taacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgg 604  Q
    |||||||||||| || || |||| ||| || |||||||||||||||||||||||| |  |||   ||| |  ||||||||||||||   ||||||| |||    
T  26992080 taacaaggaccattttccgttaaggacccttcattgaaggaagaaaaaatgagtcccggttaaagaacagacaactatataaggacc--ctctctcctgg 26991983  T
Q  605 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 667  Q
      |||||||||| | ||||| ||||| |||||||||||| ||||||  |||||||||||||||    
T  26991982 ataactaacgggcctcacgtttaaaa-aagtaataaaatgtgtattacttggtcccacttgca 26991921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 474 - 679
Target Start/End: Complemental strand, 27163374 - 27163173
Alignment:
Q  474 ctaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacg 573  Q
    |||||| ||||||||||||| ||||||||||||||||||||| ||     |||| ||| | |||||| ||||||||||| |||||   ||||| | |||     
T  27163374 ctaagatcatctccaatgggggtttcttacttaacaaggaccgctcattgttaaggaccc-ccattggaggaagaaaaa-tgagtacatattaagtaaca 27163277  T
Q  574 gggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaa 673  Q
       ||||||||||||||   |||| || ||  |||||||| |||| ||||| |||||||||||||||||||| ||   |||||| |||||| ||||||||    
T  27163276 tacaactatataaggact--ctctttcctgaacaactaacaggtctcacgtttaaaagaagtaataaaatatatacaagttggttccactttcaaaagaa 27163179  T
Q  674 gtaata 679  Q
    ||||||    
T  27163178 gtaata 27163173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 477 - 559
Target Start/End: Complemental strand, 30627472 - 30627391
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 559  Q
    ||||||||||||||||| ||  |||||||||||||||||||| ||| |||| ||| |||||||| || |||||||||||||||    
T  30627472 agagcatctccaatgggggtc-cttacttaacaaggaccactccccgttaaggaccctccattggagaaagaaaaaatgagtc 30627391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 648
Target Start/End: Original strand, 30796562 - 30796701
Alignment:
Q  510 aggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctc--tcatgggca 607  Q
    |||| |||||||| |||| ||| |||||||||| |||||||||||||||| |||||| | |||    |||||||||||||  | |||||  ||||| | |    
T  30796562 aggatcacttcccgttaaggaccctccattgaaagaagaaaaaatgagtccctattaaggaacaaacaactatataaggatcttctctctttcatgagta 30796661  T
Q  608 actaacgggtcacacgtgtaaaagaagtaataaaatatgta 648  Q
    ||||||||||| ||||| ||||| |||||||||||| ||||    
T  30796662 actaacgggtctcacgtttaaaa-aagtaataaaatgtgta 30796701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 625 - 680
Target Start/End: Complemental strand, 46688899 - 46688845
Alignment:
Q  625 gtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataa 680  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  46688899 gtaaaagaagtaataaa-tatgtactggttggtcctacttgcaaaagaagtaataa 46688845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 679
Target Start/End: Complemental strand, 13004418 - 13004224
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 576  Q
    |||||||||  |||||||| | ||||||||||||  |||||| ||  |||| |||   |||||  |||||||||||||||||| |  |||   ||||||     
T  13004418 agagcatctttaatgggaggtccttacttaacaaataccactccctgttaaggacctcccattcgaggaagaaaaaatgagtccccgttaaagaacgggt 13004319  T
Q  577 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 676  Q
    ||||||||||| || | |||||||        |||| ||||| ||||| ||||||||||||| ||||||||| |   ||||||||||| |||||||||||    
T  13004318 aactatataagaaccttctctctc--------ctaatgggtcccacgtttaaaagaagtaatcaaatatgtactatatggtcccacttacaaaagaagta 13004227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 577 - 679
Target Start/End: Original strand, 39092820 - 39092922
Alignment:
Q  577 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 676  Q
    |||||||||||| ||| || | || | |||||||||||| |  ||||| |||||||| ||||||||||| || | ||||||| ||||||||||  |||||    
T  39092820 aactatataagggcattctttttcctaggcaactaacggatttcacgtttaaaagaaataataaaatatatactagttggtctcacttgcaaacaaagta 39092919  T
Q  677 ata 679  Q
    |||    
T  39092920 ata 39092922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 606 - 679
Target Start/End: Complemental strand, 18898348 - 18898275
Alignment:
Q  606 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    ||||||||| ||| |||||  ||||||||||||||||||||||   |||| |||||||| ||||| ||||||||    
T  18898348 caactaacgagtctcacgttcaaaagaagtaataaaatatgtacaagttgatcccactttcaaaataagtaata 18898275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 679
Target Start/End: Original strand, 31437064 - 31437116
Alignment:
Q  627 aaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    |||| ||||||||||||||||||  |||||||| |||| ||||||||||||||    
T  31437064 aaaataagtaataaaatatgtataagttggtcctactttcaaaagaagtaata 31437116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 679
Target Start/End: Original strand, 52898403 - 52898462
Alignment:
Q  620 cacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    ||||| ||||||||||||||||||||||||  ||||||| ||||| ||||| || |||||    
T  52898403 cacgtttaaaagaagtaataaaatatgtataagttggtcacactttcaaaataaataata 52898462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 472 - 679
Target Start/End: Original strand, 37847195 - 37847402
Alignment:
Q  472 cactaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaa 571  Q
    |||| ||||||||||||||||||| | |||||||||||||||||||| ||| ||||  ||   |||||| |||||||||||||||||  | |||| | ||    
T  37847195 cacttagagcatctccaatgggaggtccttacttaacaaggaccactccccgttaagaacctcccattggaggaagaaaaaatgagttcccattaaggaa 37847294  T
Q  572 cggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaag 671  Q
    |||| |||||||||||||||| ||||||| | || |||||||||||  ||||| ||||||||||||||||||||||| |   ||||||||||| ||||||    
T  37847295 cgggtaactatataaggacattctctctcttaggaaactaacgggttccacgtttaaaagaagtaataaaatatgtactatgtggtcccacttacaaaag 37847394  T
Q  672 aagtaata 679  Q
    ||||||||    
T  37847395 aagtaata 37847402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 480 - 679
Target Start/End: Complemental strand, 21848775 - 21848576
Alignment:
Q  480 gcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaac 579  Q
    ||||||||||| || ||| |||||||| |||||| |||| | | |||| ||| |||||||| |||||||||||| ||||| |||||| |||||    |||    
T  21848775 gcatctccaataggggttccttacttagcaaggatcactcctcgttaaggaccctccattggaggaagaaaaaacgagtccctattaagcaacaaacaac 21848676  T
Q  580 tatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    |||||||||||||  |||||| |||||||||||| |||  ||||| |||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||    
T  21848675 tatataaggacattatctctcctgggcaactaacaggttccacgtttaaatgaagtaataaaatatgtattagtttgtcccacttgcaaaaaaagtaata 21848576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 477 - 680
Target Start/End: Complemental strand, 25750170 - 25749966
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaa-tgagtctctattatgcaacggg 575  Q
    ||||||||||||||| | |||  ||||||||||| || |||| ||| |||| ||||   ||||| |||||||||||| ||| | | ||||| | |||| |    
T  25750170 agagcatctccaatgagggttctttacttaacaaagatcactccccgttaaggacatctcattggaggaagaaaaaaatgaatttttattaaggaacgag 25750071  T
Q  576 gaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagt 675  Q
     ||||  ||||||||   ||||||  | |||||||||||| || ||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  25750070 caacttaataaggaccctctctcttctaggcaactaacggatcccacgtgtcaaaaaagtaataaaatatgtactggttggtcccacttgcaaaataagt 25749971  T
Q  676 aataa 680  Q
    |||||    
T  25749970 aataa 25749966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 535 - 679
Target Start/End: Original strand, 39446159 - 39446303
Alignment:
Q  535 ccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaag 634  Q
    |||||| |||||||||||| ||||| |||||| |||||    |||||||||||||     |||||| |  ||||| |||| ||| | ||| |||||||||    
T  39446159 ccattggaggaagaaaaaacgagtccctattaagcaacaaacaactatataaggattatttctctcctaagcaacaaacgagtctcgcgtctaaaagaag 39446258  T
Q  635 taataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    |||||||||||||||| |||| |||||||||||||||||||||||    
T  39446259 taataaaatatgtattagttgatcccacttgcaaaagaagtaata 39446303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 477 - 648
Target Start/End: Complemental strand, 3704071 - 3703897
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaa---atgagtctctattatgcaacg 573  Q
    ||||||||| ||| || || ||||||||||| |||||||||| || ||||| ||  ||| |||| || ||||||||   ||||||| | |||||| ||||    
T  3704071 agagcatcttcaacggaaggttcttacttaataaggaccactccctattaaggatcctctattggagaaagaaaaaattatgagtccccattatggaacg 3703972  T
Q  574 gggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgta 648  Q
     | |||||||||||||    || |||| | ||  ||||| ||||| ||||| |||||||||||||||||||||||    
T  3703971 agtaactatataaggatcctctatctcctaggttactaatgggtctcacgtttaaaagaagtaataaaatatgta 3703897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 488 - 667
Target Start/End: Original strand, 36749735 - 36749911
Alignment:
Q  488 aatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataag 587  Q
    |||||||| | | |||||||||||||||||| |||||||| ||  || ||| | |||||||||||||||||  |  ||| | || | | |||||||||||    
T  36749735 aatgggaggtccctacttaacaaggaccactccccattaaggatccttcatcggaggaagaaaaaatgagttcccgttaaggaatgagtaactatataag 36749834  T
Q  588 gacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 667  Q
    |||   ||||||| |||| |||||||||||| ||  | ||||| || |||||||||||||| | |||| |||||||||||    
T  36749835 gac--cctctctcttgggtaactaacgggtcccatatttaaaa-aattaataaaatatgtactagttgttcccacttgca 36749911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 474 - 679
Target Start/End: Complemental strand, 2969403 - 2969198
Alignment:
Q  474 ctaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacg 573  Q
    |||| ||||||||||||||||| |  ||| |||||||||||| ||     |||| ||  |||||||| ||||||| |||||||||| | || | | |||     
T  2969403 ctaatagcatctccaatgggagctcattaattaacaaggaccgctcattgttaaggatcctccattggaggaagagaaaatgagtccccatcaaggaaca 2969304  T
Q  574 gggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaa 673  Q
     | || ||||||||||     |||||| | ||||||||| ||||| ||||| ||||||||||||||||||||||| |   || || ||||| ||||||||    
T  2969303 tgtaattatataaggattctatctctcctaggcaactaatgggtcccacgtttaaaagaagtaataaaatatgtaatatgtgatctcacttacaaaagaa 2969204  T
Q  674 gtaata 679  Q
    ||||||    
T  2969203 gtaata 2969198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 594 - 679
Target Start/End: Original strand, 19140982 - 19141067
Alignment:
Q  594 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    ||||||| || ||||||||| |||| || || ||||||||||| ||| ||||||||  |||||||||| || ||||||||||||||    
T  19140982 ctctctcctgagcaactaacaggtctcatgtttaaaagaagtattaagatatgtataagttggtcccattttcaaaagaagtaata 19141067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 477 - 641
Target Start/End: Original strand, 12016085 - 12016248
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 576  Q
    ||||||||||||||||| ||| ||||||||||||| | || | |   ||||  || |||||||| |||||||||||| ||||  |||| | | |||        
T  12016085 agagcatctccaatggg-gttccttacttaacaagaatcattccttgttaagcaccctccattggaggaagaaaaaaagagtacctatcaagtaacatat 12016183  T
Q  577 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaa 641  Q
    |||||||||||||| | |||||||  | |||||||||||||| ||||| |||||||| |||||||    
T  12016184 aactatataaggaccttctctctcccgagcaactaacgggtctcacgtttaaaagaaataataaa 12016248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 624 - 680
Target Start/End: Original strand, 27957498 - 27957554
Alignment:
Q  624 tgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataa 680  Q
    |||||||||||||||||||||| || ||||| |||||| ||||||||||| ||||||    
T  27957498 tgtaaaagaagtaataaaatatatactggttagtcccaattgcaaaagaaataataa 27957554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 559
Target Start/End: Complemental strand, 28967897 - 28967837
Alignment:
Q  499 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 559  Q
    |||||||||||||||||||||||| |||| ||| ||| |||  ||||||||||||||||||    
T  28967897 cttacttaacaaggaccacttcccgttaaggaccctctattagaggaagaaaaaatgagtc 28967837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 608 - 680
Target Start/End: Complemental strand, 42029742 - 42029670
Alignment:
Q  608 actaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataa 680  Q
    |||||||||||| || | |||||||||||||||||||||||||  |||||| |||||  ||||||| ||||||    
T  42029742 actaacgggtcatacatttaaaagaagtaataaaatatgtattatttggtctcacttataaaagaaataataa 42029670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 597 - 679
Target Start/End: Original strand, 12671677 - 12671759
Alignment:
Q  597 tctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    ||||||| |||||||||||| |  |||| ||||||||||| ||||||||||||  | | |||||||||  |||||||||||||    
T  12671677 tctcatgagcaactaacgggacctacgtttaaaagaagtattaaaatatgtataaggttgtcccacttttaaaagaagtaata 12671759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 679
Target Start/End: Complemental strand, 11916429 - 11916292
Alignment:
Q  533 ctccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaaga 632  Q
    |||||||| |||||| ||||||||||   ||||| |||||| | || ||||||||||  | ||||||| | ||||| ||| | ||||||||| |||||||    
T  11916429 ctccattggaggaagtaaaaatgagtacatattaagcaacgagcaaatatataagga--ttctctctcctaggcaattaatgagtcacacgtttaaaaga 11916332  T
Q  633 agtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    |||||||       || | |||||||| |||||||||||||||||||    
T  11916331 agtaata-------tactagttggtccaacttgcaaaagaagtaata 11916292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 558
Target Start/End: Complemental strand, 14332676 - 14332596
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagt 558  Q
    ||||||||||||| ||| ||  ||||||||| ||||||| || || ||||| ||| ||||||||||| ||||||||||||||    
T  14332676 agagcatctccaacgggggtc-cttacttaataaggaccgctccctattaaggaccctccattgaagaaagaaaaaatgagt 14332596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 607 - 680
Target Start/End: Original strand, 12184619 - 12184692
Alignment:
Q  607 aactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataa 680  Q
    ||||||||||||||| || ||||| ||||||||||||||||| |  |||||| |||||||| |||| ||||||||    
T  12184619 aactaacgggtcacatgtttaaaa-aagtaataaaatatgtactacttggtctcacttgcataaaggagtaataa 12184692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 545 - 680
Target Start/End: Original strand, 19735503 - 19735638
Alignment:
Q  545 aagaaaaaatgagtctctattatgcaacggggaactatataagga-catgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaat 643  Q
    |||||||||||||||||||||| |||||  | ||||||||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||||||    
T  19735503 aagaaaaaatgagtctctattaagcaacatgcaactatataaggatcat-ctctctcatgggcaactaacgggtccgacgtgtaaaagaagtaataaaat 19735601  T
Q  644 atgtattggttggtcccacttgcaaaagaagtaataa 680  Q
    ||||| ||||||||| |||||| ||||||||||||||    
T  19735602 atgtactggttggtctcacttgtaaaagaagtaataa 19735638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 477 - 667
Target Start/End: Original strand, 583824 - 584013
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 576  Q
    ||||||||||||||||| | | |||||||||||||||||| | ||| |||| ||| |||||||| |||||||||||||||||| |  ||| | ||||||     
T  583824 agagcatctccaatggggggtccttacttaacaaggaccaatccccgttaaggaccctccattggaggaagaaaaaatgagtcccccttaaggaacgggc 583923  T
Q  577 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 667  Q
    ||||||||||||||   ||||||| |||| |||||||||||| ||||| ||||| ||||||||||||||||| |  |||||||||||||||    
T  583924 aactatataaggaccctctctctcctgggtaactaacgggtcccacgtttaaaa-aagtaataaaatatgtactacttggtcccacttgca 584013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 477 - 680
Target Start/End: Complemental strand, 17503534 - 17503332
Alignment:
Q  477 agagcatctccaatg-ggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaa-tgagtctctattatgcaacgg 574  Q
    ||||||||||||||| || ||| |||||||||||||||||||| ||| |||| ||   ||||||| |||||||||||| | ||||  ||||| |||||      
T  17503534 agagcatctccaatgtggggttccttacttaacaaggaccactccccgttaaggattttccattggaggaagaaaaaaataagtccatattaagcaacaa 17503435  T
Q  575 ggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaag 674  Q
    | ||||||||||| ||   ||||||| ||  |||| |||||  | |||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  17503434 gcaactatataagaact--ctctctcttgatcaac-aacggaccccacgtgtaaaagaagtaataaactatgtactggttggtcccacttgcaaaagaag 17503338  T
Q  675 taataa 680  Q
    ||||||    
T  17503337 taataa 17503332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 477 - 680
Target Start/End: Original strand, 17549680 - 17549882
Alignment:
Q  477 agagcatctccaatg-ggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaa-tgagtctctattatgcaacgg 574  Q
    ||||||||||||||| || ||| |||||||||||||||||||| ||| |||| ||   ||||||| |||||||||||| | ||||  ||||| |||||      
T  17549680 agagcatctccaatgtggggttccttacttaacaaggaccactccccgttaaggattttccattggaggaagaaaaaaataagtccatattaagcaacaa 17549779  T
Q  575 ggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaag 674  Q
    | ||||||||||| ||   ||||||| ||  |||| |||||  | |||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  17549780 gcaactatataagaact--ctctctcttgatcaac-aacggaccccacgtgtaaaagaagtaataaactatgtactggttggtcccacttgcaaaagaag 17549876  T
Q  675 taataa 680  Q
    ||||||    
T  17549877 taataa 17549882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 477 - 680
Target Start/End: Original strand, 2842312 - 2842519
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 576  Q
    ||||| ||||||||||| | |  |||||||||| ||| || | ||| |||| ||| |||||||| | |||||||||||||||| || ||| | |||||      
T  2842312 agagcctctccaatgggggatctttacttaacagggatcattccccgttaaggaccctccattggaagaagaaaaaatgagtccctgttaaggaacggac 2842411  T
Q  577 aactatataaggacat--gctctctcatgggcaactaacgggtcacacgtgtaaaagaa-gtaataaaatatgtattggttggtcccacttgca-aaaga 672  Q
    |||||||||||||  |   ||||||| |  | || ||||||||| ||||| ||||| || ||||||||||||||| |  ||||||||||||||| ||||     
T  2842412 aactatataaggatcttctctctctcctaagtaattaacgggtcccacgtttaaaaaaaggtaataaaatatgtactacttggtcccacttgcataaagg 2842511  T
Q  673 agtaataa 680  Q
    ||||||||    
T  2842512 agtaataa 2842519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 558
Target Start/End: Complemental strand, 8515869 - 8515787
Alignment:
Q  477 agagcatctccaatgggagtttcttactt-aacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagt 558  Q
    ||||||||||||||||| | | ||||||| ||||||||| ||| ||| |||| ||| |||||||| |||||||||||||||||    
T  8515869 agagcatctccaatggggggtccttactttaacaaggactactccccgttaaggactctccattggaggaagaaaaaatgagt 8515787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 559
Target Start/End: Complemental strand, 48293932 - 48293850
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 559  Q
    ||||||||||||||| ||| | |||||| ||||||||||||| ||| |||| ||  |||||||| ||||||||||||| ||||    
T  48293932 agagcatctccaatgagaggtccttactaaacaaggaccactccccgttaaggatcctccattggaggaagaaaaaataagtc 48293850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 559
Target Start/End: Original strand, 48557738 - 48557798
Alignment:
Q  499 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 559  Q
    ||||||||||||||| |||| |||||||| ||| || ||||| ||||||||||||||||||    
T  48557738 cttacttaacaaggatcactccccattaaggacccttcattggaggaagaaaaaatgagtc 48557798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 477 - 558
Target Start/End: Complemental strand, 8489060 - 8488978
Alignment:
Q  477 agagcatctccaatgggagtttcttactt-aacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagt 558  Q
    ||||||||||||||||| | | ||||||| ||||||||| ||| ||  |||| ||| |||||||| |||||||||||||||||    
T  8489060 agagcatctccaatggggggtccttactttaacaaggactactccctgttaaggactctccattggaggaagaaaaaatgagt 8488978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 626 - 676
Target Start/End: Original strand, 48767475 - 48767525
Alignment:
Q  626 taaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 676  Q
    |||||||||||||||||||||||   ||||||||||||| | |||||||||    
T  48767475 taaaagaagtaataaaatatgtacaagttggtcccactttcgaaagaagta 48767525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 574
Target Start/End: Original strand, 8352513 - 8352614
Alignment:
Q  474 ctaagagcatctccaatgggagt-ttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaac 572  Q
    |||||||||||| ||||||| |  |||||||||||||| || |||||||  ||||  || || ||||| |  ||||||||||||||| |||||| |||||    
T  8352513 ctaagagcatcttcaatggggggattcttacttaacaatgatcacttcctgttaagaacccttcattggattaagaaaaaatgagtccctattaagcaac 8352612  T
Q  573 gg 574  Q
    ||    
T  8352613 gg 8352614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 606 - 670
Target Start/End: Original strand, 27399428 - 27399492
Alignment:
Q  606 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaa 670  Q
    ||||||||  ||||| ||| ||||||||||||||||| || ||||  ||||||| ||||||||||    
T  27399428 caactaacaagtcacgcgtttaaaagaagtaataaaagatatattaattggtcctacttgcaaaa 27399492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 577 - 648
Target Start/End: Original strand, 36452258 - 36452330
Alignment:
Q  577 aactatataaggac-atgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgta 648  Q
    |||||||||||||| ||  |||||||| |  |||||||||  | ||||||||||||||| |||||||||||||    
T  36452258 aactatataaggaccattttctctcattgataactaacggaccccacgtgtaaaagaagcaataaaatatgta 36452330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 477 - 667
Target Start/End: Original strand, 51175280 - 51175469
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 576  Q
    ||||||||||||||||| | | |||||||||||||||||||| ||| |||| ||| |||||||| |||||||||||||||||| |  ||| | ||||||     
T  51175280 agagcatctccaatggggggtccttacttaacaaggaccactccccgttaaggaccctccattggaggaagaaaaaatgagtccccgttaaggaacgggc 51175379  T
Q  577 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 667  Q
    ||||||||||||||   |||||||||||| |||||||||||| ||||| ||||| || ||||||||| |||| |  |||||||||||||||    
T  51175380 aactatataaggaccctctctctcatgggtaactaacgggtcccacgtttaaaa-aattaataaaatgtgtactacttggtcccacttgca 51175469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 473 - 680
Target Start/End: Original strand, 37450621 - 37450825
Alignment:
Q  473 actaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaac 572  Q
    |||| |||||||| ||||||  ||| |||||||||||| ||| ||| ||| |||| ||| | | |||| ||||||||||  ||||||||||||| |||||    
T  37450621 actatgagcatcttcaatggaggttccttacttaacaatgactactccccgttaaggaccc-ctattggaggaagaaaa--tgagtctctattaagcaac 37450717  T
Q  573 ggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaaga 672  Q
    | | ||||||||||||||   | ||||  | ||||||||||||  | |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37450718 gagcaactatataaggaccctccctcttctaggcaactaacggaccccacgtgtaaaagaagtaataaaatatgtattggttgatcccacttgcaaaaga 37450817  T
Q  673 agtaataa 680  Q
    ||||||||    
T  37450818 agtaataa 37450825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 473 - 670
Target Start/End: Complemental strand, 31768124 - 31767928
Alignment:
Q  473 actaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaac 572  Q
    |||||||||||||| |||||| | | |||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||| |  ||| | | |    
T  31768124 actaagagcatctcaaatggggggtccttacttaacaaggaccactccccgttaaggaccctccattgaaggaagaaaaaatgagtcaccgttaaggatc 31768025  T
Q  573 ggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaa 670  Q
    | | ||||||||||| ||   ||||||| |||| |||||||||||| ||||| ||||| |||||||||||| |||| |  || |||||||||| ||||    
T  31768024 gagcaactatataagaactctctctctcctgggtaactaacgggtcccacgtttaaaa-aagtaataaaatgtgtactacttagtcccacttgtaaaa 31767928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 482 - 680
Target Start/End: Complemental strand, 56397375 - 56397178
Alignment:
Q  482 atctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaacta 581  Q
    |||||||||||| | |||||| |||||||||| |||||||| |||| ||| || ||||| || |  ||||||||||||| || || ||||  |   ||||    
T  56397375 atctccaatggg-gcttcttatttaacaaggatcacttcccgttaaagacccttcattggagaagaaaaaaatgagtctttactaagcaatagacgacta 56397277  T
Q  582 tataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataa 680  Q
    ||||||||  | |||| |||| ||||||||||||||||||| |||||||||| |||||||||||| | | |||| ||| ||||| ||||||||| ||||    
T  56397276 tataaggattttctctttcataggcaactaacgggtcacacatgtaaaagaaataataaaatatgcagtagttgatccgacttgtaaaagaagttataa 56397178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 477 - 636
Target Start/End: Original strand, 4711248 - 4711403
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 576  Q
    ||||||||||||||||| ||| |||||||||||||||||||| |||||| | ||  ||| |||| ||||||||||||||||||  ||||| ||||| |      
T  4711248 agagcatctccaatgggggtt-cttacttaacaaggaccactccccattgaagat-ctctattggaggaagaaaaaatgagtccatattaagcaactgac 4711345  T
Q  577 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagta 636  Q
    |||||||||| |||   ||||||| ||| ||||||||||||||| ||| |||||||||||    
T  4711346 aactatataaagact--ctctctcttggacaactaacgggtcacgcgtttaaaagaagta 4711403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 498 - 667
Target Start/End: Original strand, 38068284 - 38068452
Alignment:
Q  498 tcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctct 597  Q
    ||||||||||||||||| ||| ||| ||||  || |||||||| |||||||||||| ||||| |  ||| | |||| | |||||||||||||| | ||||    
T  38068284 tcttacttaacaaggactactccccgttaagaaccctccattggaggaagaaaaaacgagtcccccttaaggaacgagtaactatataaggacct-ctct 38068382  T
Q  598 ctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 667  Q
    ||| |||| |||||||| ||| ||||| ||||| || ||||||||| |||| |  |||||||||||||||    
T  38068383 ctcctgggtaactaacgagtctcacgtttaaaaaaaataataaaatgtgtactacttggtcccacttgca 38068452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 473 - 679
Target Start/End: Original strand, 38067602 - 38067807
Alignment:
Q  473 actaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaac 572  Q
    ||||||| |||||  |||||||| | |||||||||||||||||||| ||  ||||  || | |||||| ||||||||||||||| || | |||| | |||    
T  38067602 actaagaacatctttaatgggaggtccttacttaacaaggaccactccctgttaagaaccc-ccattggaggaagaaaaaatgaatccccattaaggaac 38067700  T
Q  573 ggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaaga 672  Q
     || ||||||||||| |    ||||||| | || ||||||||| |  ||||| ||||||||||||||||||||||| |   ||||||| ||| |||||||    
T  38067701 aggtaactatataagaatcccctctctcctaggtaactaacggatttcacgtttaaaagaagtaataaaatatgtaatatgtggtcccgcttacaaaaga 38067800  T
Q  673 agtaata 679  Q
    |||||||    
T  38067801 agtaata 38067807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 477 - 667
Target Start/End: Original strand, 12191279 - 12191467
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 576  Q
    ||||||||||||||||| ||  |||||||||||||||||| | ||| |||| ||| || ||||||||||||||||||| ||||    ||||| |||| |     
T  12191279 agagcatctccaatgggggtc-cttacttaacaaggaccagtccccgttaaggacccttcattgaaggaagaaaaaattagtcctcgttatggaacgagc 12191377  T
Q  577 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 667  Q
    ||||||||||||||   ||||||| || | ||  |||||||| || || ||||| |||||||| ||| |||| |  |||||||||||||||    
T  12191378 aactatataaggactctctctctcctgagtaatgaacgggtcccaagtataaaa-aagtaatataatgtgtactacttggtcccacttgca 12191467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 477 - 559
Target Start/End: Complemental strand, 44992099 - 44992018
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 559  Q
    ||||||||||||||||| ||  |||||||||||||||||||| ||| |||| ||| |||||||| ||||||||||||||||||    
T  44992099 agagcatctccaatgggggtc-cttacttaacaaggaccactccccgttaaggaccctccattggaggaagaaaaaatgagtc 44992018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 499 - 680
Target Start/End: Original strand, 40445546 - 40445724
Alignment:
Q  499 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctc 598  Q
    ||||||||||||||||||||  ||||||| ||| |||||||| || ||||||||||||||| |  |||   |||    ||||||||||||||   |||||    
T  40445546 cttacttaacaaggaccactctccattaaggaccctccattggagaaagaaaaaatgagtc-cccttaaagaacaaacaactatataaggac--tctctc 40445642  T
Q  599 tcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataa 680  Q
    ||||| | |||||||||||| ||||| ||||| |||||||||||| |||| || |||  |||||||||| |||| ||||||||    
T  40445643 tcatgagtaactaacgggtcccacgtttaaaa-aagtaataaaatgtgtactgcttgaccccacttgcataaaggagtaataa 40445724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 594 - 679
Target Start/End: Complemental strand, 36622366 - 36622281
Alignment:
Q  594 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    ||||||| || |||||||||||||| ||| | ||||||||||||| |||||| |||  |||||||||||||  |||||||||||||    
T  36622366 ctctctcctgagcaactaacgggtcccacatttaaaagaagtaatcaaatatatataagttggtcccacttttaaaagaagtaata 36622281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 499 - 664
Target Start/End: Complemental strand, 45832400 - 45832236
Alignment:
Q  499 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctc 598  Q
    |||||||||||||||||||| ||  |||| ||| |||||||| ||||||||||||| |||| |  |||   ||| |  |||||||||| |||   |||||    
T  45832400 cttacttaacaaggaccactcccagttaaggaccctccattggaggaagaaaaaataagtcaccgttaaagaacagacaactatataaagaccctctctc 45832301  T
Q  599 tcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccactt 664  Q
    || |||| |||||||||||  ||||| ||||| |||||||||||| |||| |  ||||||||||||    
T  45832300 tcctgggtaactaacgggttccacgtttaaaa-aagtaataaaatgtgtactacttggtcccactt 45832236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 499 - 670
Target Start/End: Complemental strand, 56228727 - 56228562
Alignment:
Q  499 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggaca--tgctc 596  Q
    ||||||||||||| |||||| ||| |||| ||| |||||||| ||||| ||||| |||||||      || |||||  ||||||||||||||   | |||    
T  56228727 cttacttaacaagaaccactccccgttaaggaccctccattggaggaacaaaaa-tgagtct------tggaacggacaactatataaggactatttctc 56228635  T
Q  597 tctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaa 670  Q
    |||| || | |||||||||||| ||||| ||||| ||||||||||||||||| |  |||| |||||||| ||||    
T  56228634 tctcctgagtaactaacgggtcccacgtttaaaa-aagtaataaaatatgtactacttggccccacttgtaaaa 56228562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 588
Target Start/End: Original strand, 39718868 - 39718982
Alignment:
Q  474 ctaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacg 573  Q
    |||||| |||||||||| |  | | ||||||||| |||||||||| ||| |||| ||| || ||||| ||||||||||||||||| ||  ||| | ||||    
T  39718868 ctaagaacatctccaatagagggtccttacttaataaggaccactccccgttaaggactcttcattgcaggaagaaaaaatgagtttccgttaaggaacg 39718967  T
Q  574 gggaactatataagg 588  Q
     | ||||||||||||    
T  39718968 agcaactatataagg 39718982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 561
Target Start/End: Original strand, 32409313 - 32409373
Alignment:
Q  501 tacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctc 561  Q
    |||||||||||||||||| ||| |||| ||  |||||||| |||||||| |||||||||||    
T  32409313 tacttaacaaggaccactccccgttaaggatcctccattggaggaagaacaaatgagtctc 32409373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 621 - 679
Target Start/End: Complemental strand, 27064631 - 27064573
Alignment:
Q  621 acgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    |||| |||||||||||| |||||||||||  |||||| |||||| | ||||||||||||    
T  27064631 acgtttaaaagaagtaagaaaatatgtataagttggttccactttcgaaagaagtaata 27064573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 621 - 679
Target Start/End: Complemental strand, 27085735 - 27085677
Alignment:
Q  621 acgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    |||| |||||||||||| |||||||||||  |||||| |||||| | ||||||||||||    
T  27085735 acgtttaaaagaagtaagaaaatatgtataagttggttccactttcgaaagaagtaata 27085677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 31639059 - 31639108
Alignment:
Q  48 ttcaaaacatttggagacagagttaagaactggatgactttcaatgaacc 97  Q
    |||||| | |||||||||||||||||| ||||||| || |||||||||||    
T  31639059 ttcaaagcttttggagacagagttaagcactggattaccttcaatgaacc 31639108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 626 - 670
Target Start/End: Complemental strand, 36456554 - 36456510
Alignment:
Q  626 taaaagaagtaataaaatatgtattggttggtcccacttgcaaaa 670  Q
    ||||||||||||||||||||||||  ||||||| ||||| |||||    
T  36456554 taaaagaagtaataaaatatgtataagttggtctcactttcaaaa 36456510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 475 - 679
Target Start/End: Original strand, 28131092 - 28131296
Alignment:
Q  475 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgg 574  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| || ||||| ||| | |||||| |||||||||||||||||   ||||| | |||||    
T  28131092 taagagcatctccaatgggaggttcttacttaacaaggatcactccctattaaagaccccccattggaggaagaaaaaatgagttcttattaaggaacgg 28131191  T
Q  575 ggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaag 674  Q
    |  ||||||||| |||    |||||| |  |||||||| ||||  ||||| ||||| || |||||| |||||||||  |||||||||||||||||||||     
T  28131192 gtcactatataaagactctttctctcctaagcaactaatgggttccacgtttaaaataaataataatatatgtattacttggtcccacttgcaaaagaaa 28131291  T
Q  675 taata 679  Q
    |||||    
T  28131292 taata 28131296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 475 - 667
Target Start/End: Original strand, 19610900 - 19611091
Alignment:
Q  475 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgg 574  Q
    ||||||||||||||||||| | | |||| ||||||||||| |||| || |||| ||| |||||||| |||||||||||||||||| |  ||| | |||||    
T  19610900 taagagcatctccaatggggggtccttatttaacaaggactactttccgttaaggaccctccattggaggaagaaaaaatgagtccccgttaaggaacgg 19610999  T
Q  575 ggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 667  Q
    | |||||||||||||| | ||||||| |  | |||||||||||| ||||| ||||| || ||||||||| |||| |  |||||||||||||||    
T  19611000 gtaactatataaggaccttctctctcttaagtaactaacgggtctcacgtttaaaa-aattaataaaatgtgtactacttggtcccacttgca 19611091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 481 - 679
Target Start/End: Complemental strand, 1560103 - 1559905
Alignment:
Q  481 catctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaact 580  Q
    |||||||||||| || | |||||||||||| ||||||| | | |||| ||| | |||||| ||||||||||||||| ||  | ||| |||||    ||||    
T  1560103 catctccaatggaaggtccttacttaacaaagaccactcctcgttaaggactccccattggaggaagaaaaaatgaatccatgttaagcaacatacaact 1560004  T
Q  581 atataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    ||||||||||   || ||||||||||||||| | |||| ||||| ||||| ||||||||||||||||| | ||||||| ||||||||| ||||||||||    
T  1560003 atataaggaccatctttctcatgggcaactagcaggtctcacgtttaaaaaaagtaataaaatatgtactagttggtcacacttgcaacagaagtaata 1559905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 477 - 675
Target Start/End: Complemental strand, 1292230 - 1292033
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 576  Q
    ||||||||| |||||| || | |||||||||||| || ||||    ||||| ||| | |||||| | ||||||||||||||| || |||| | ||| ||     
T  1292230 agagcatcttcaatggaagatccttacttaacaaagatcactctttattaaggaccc-ccattggaagaagaaaaaatgagtatccattaagaaacaggt 1292132  T
Q  577 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagt 675  Q
    ||||||||||||||    |||||| | |||||||||||| || ||||| ||||||||||||||||||||||| |  |||||| || || ||||||||||    
T  1292131 aactatataaggactctatctctcctaggcaactaacggatcccacgtttaaaagaagtaataaaatatgtactatttggtctcatttccaaaagaagt 1292033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 594 - 680
Target Start/End: Complemental strand, 25701729 - 25701643
Alignment:
Q  594 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataa 680  Q
    ||||||||| | |||||||||| || ||||||||||||||||||||||||||||   |||| |||||||||||||||||| ||||||    
T  25701729 ctctctcatcgacaactaacggatcccacgtgtaaaagaagtaataaaatatgttccggtttgtcccacttgcaaaagaaataataa 25701643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 544 - 679
Target Start/End: Original strand, 38585784 - 38585919
Alignment:
Q  544 gaagaaaaaatgagtctctattatgcaacggggaactatataagga-catgctctctcatgggcaactaacgggtcacacgtgtaaaa-gaagtaataaa 641  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||| ||| |||||||||  | |||||||||||| ||||| ||||| ||| |||||||    
T  38585784 gaagaaaaaatgagtctc-attaagcaacggacaactatataaggatcat-ctctctcataagaaactaacgggtcgcacgtttaaaaagaaataataaa 38585881  T
Q  642 atatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    ||||||||| |||||||  | || ||||||||||||||    
T  38585882 atatgtattagttggtcttatttacaaaagaagtaata 38585919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 475 - 648
Target Start/End: Complemental strand, 1152160 - 1151987
Alignment:
Q  475 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgg 574  Q
    ||||||| ||||||||| ||  | ||||||||| ||||| || | ||| |||| ||| |||||||| ||||||||||||||||||   |||| | ||||     
T  1152160 taagagcgtctccaatgagaagtccttacttaataaggatcattccccgttaaggaccctccattggaggaagaaaaaatgagtcctcattaagaaacga 1152061  T
Q  575 ggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgta 648  Q
    | || |||||||| ||   ||||||| | ||||||||| || || | ||| |||||||||||||||||||||||    
T  1152060 gtaattatataagtaccctctctctcctaggcaactaagggatcccgcgtttaaaagaagtaataaaatatgta 1151987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 479 - 679
Target Start/End: Original strand, 33428592 - 33428792
Alignment:
Q  479 agcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaa 578  Q
    ||||||||||||||||| | |||||| |||||||| |||| ||| |||| |||   |||||| ||||||| | |||||||| |  ||| | ||||   ||    
T  33428592 agcatctccaatgggaggtccttactgaacaaggatcactccccgttaaggacctcccattggaggaagagataatgagtccccgttaagtaacgaataa 33428691  T
Q  579 ctatataagg-acatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaa 677  Q
    |||||||||| |||| ||||||| | | ||| ||||||||| || || ||||| |||||||||||||||||||   ||||||||| |  |||||||||||    
T  33428692 ctatataaggtacat-ctctctcctagacaaataacgggtctcatgtttaaaaaaagtaataaaatatgtattatgtggtcccacatagaaaagaagtaa 33428790  T
Q  678 ta 679  Q
    ||    
T  33428791 ta 33428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 680
Target Start/End: Complemental strand, 3936073 - 3935876
Alignment:
Q  481 catctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaact 580  Q
    ||||||||||||| ||  ||||||||||||||||| ||  || |||| ||| |||||||| | |||||||||||||||| || ||| | ||||   ||||    
T  3936073 catctccaatgggggtc-cttacttaacaaggaccgctctccgttaaggaccctccattggaagaagaaaaaatgagtccctgttaaggaacgaaaaact 3935975  T
Q  581 atataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataa 680  Q
    ||||||||||   ||||||| |||| |||||||||||   || | ||||| |||||||||||| |||| |  ||  ||||||||| ||||| ||||||||    
T  3935974 atataaggaccctctctctcttgggtaactaacgggttcaacatttaaaa-aagtaataaaatgtgtactacttaatcccacttgtaaaaggagtaataa 3935876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 479 - 641
Target Start/End: Complemental strand, 35540709 - 35540547
Alignment:
Q  479 agcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaa 578  Q
    ||||||| ||||||||| | |||| |||||||||| ||||  |  ||||  |  |||||||| ||||||||||||||||||  ||||| | |||  | ||    
T  35540709 agcatcttcaatgggaggtccttatttaacaaggatcactctctgttaagtatcctccattggaggaagaaaaaatgagtcaatattaagtaacatgtaa 35540610  T
Q  579 ctatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaa 641  Q
    |||||||||||  | ||||||| | ||||||||||||||| ||| | |||||||| |||||||    
T  35540609 ctatataaggattttctctctcctaggcaactaacgggtctcacatttaaaagaaataataaa 35540547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 487 - 679
Target Start/End: Original strand, 32551926 - 32552113
Alignment:
Q  487 caatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataa 586  Q
    ||||||||| | ||||||||||||||||||||  |  |||| ||| |||||||| ||||||||||||||| |||| ||||   |||||| || | |||||    
T  32551926 caatgggaggtccttacttaacaaggaccactctctgttaaggaccctccattggaggaagaaaaaatgaatctccattaaaaaacgggtaattgtataa 32552025  T
Q  587 ggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    ||   | ||||| | |  |||||||||||     |||| | ||||||||||||||| |||||||   ||||||| ||| ||||||||||||||    
T  32552026 gggttttctctcccctatgcaactaacgg-----acgttttaaagaagtaataaaacatgtattatgtggtcccgcttacaaaagaagtaata 32552113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 680
Target Start/End: Original strand, 1292318 - 1292516
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 576  Q
    |||||||||||||||||  |  |||||||||||||||| ||| ||| |||| | | |||||||  |||||||||||||||||| |  ||| | |||        
T  1292318 agagcatctccaatggg--taccttacttaacaaggac-actcccctttaagggccctccattcgaggaagaaaaaatgagtccccgttaaggaacaaac 1292414  T
Q  577 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagt 675  Q
    ||||||||||||||   ||||||| | || |||||||||||| ||| | ||||| |||||||||||| |||| |  ||||||||||||||| |||| |||    
T  1292415 aactatataaggacc--ctctctcctaggtaactaacgggtcccacatttaaaa-aagtaataaaatgtgtactaattggtcccacttgcataaaggagt 1292511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 680
Target Start/End: Complemental strand, 32722031 - 32721945
Alignment:
Q  594 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataa 680  Q
    ||||||| || ||||||||||| ||  || | ||||||||||||||||||||||||  |||||||  |||| ||||||| |||||||    
T  32722031 ctctctcctgagcaactaacggatcctacatttaaaagaagtaataaaatatgtataagttggtcttactttcaaaagatgtaataa 32721945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 680
Target Start/End: Original strand, 47142675 - 47142761
Alignment:
Q  594 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataa 680  Q
    ||||||| | |||||||||| | || ||||| ||||||||||||||||||||||| |  ||||||   ||||||||| |||||||||    
T  47142675 ctctctcctaggcaactaacagatctcacgtttaaaagaagtaataaaatatgtactatttggtcttccttgcaaaataagtaataa 47142761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 604 - 680
Target Start/End: Original strand, 48098288 - 48098364
Alignment:
Q  604 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataa 680  Q
    ||||||||||| |||  |||| |||||||| |||||||||||||| |  || |||| ||||| ||||||||||||||    
T  48098288 ggcaactaacgagtcctacgtttaaaagaactaataaaatatgtactacttagtcctacttgtaaaagaagtaataa 48098364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 648
Target Start/End: Original strand, 55222156 - 55222325
Alignment:
Q  479 agcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaa 578  Q
    ||||||||||||||| || | || |||||||||||||||| |   |||| ||| || ||||| |||||||||||||||||| |  ||| | |||    ||    
T  55222156 agcatctccaatgggggtct-ttgcttaacaaggaccactccatgttaaggacccttcattggaggaagaaaaaatgagtccccgttaaggaacaaataa 55222254  T
Q  579 ctatataagga--catgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgta 648  Q
    |||||||||||  |   ||||||| |||| |||||||||||| ||||| ||||| |||||||||||| ||||    
T  55222255 ctatataaggactctctctctctcctgggtaactaacgggtctcacgtttaaaa-aagtaataaaatgtgta 55222325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 499 - 559
Target Start/End: Original strand, 10183041 - 10183100
Alignment:
Q  499 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 559  Q
    |||||||||||||||||||| |   |||| |||||| ||||||| ||||||||||||||||    
T  10183041 cttacttaacaaggaccactccttgttaaggacact-cattgaaagaagaaaaaatgagtc 10183100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 548 - 680
Target Start/End: Complemental strand, 29465515 - 29465385
Alignment:
Q  548 aaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgt 647  Q
    ||||||||||||||| ||| |||||| | ||||||||||||||   ||||||||||||||||||||||| | |||||||||||||||| |||||||||||    
T  29465515 aaaaaatgagtctctgttaagcaacgagcaactatataaggact--ctctctcatgggcaactaacgggcctcacgtgtaaaagaagtgataaaatatgt 29465418  T
Q  648 attggttggtcccacttgcaaaagaagtaataa 680  Q
    | |||||||||  |||| |||||||| ||||||    
T  29465417 actggttggtctaacttacaaaagaaataataa 29465385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 477 - 679
Target Start/End: Original strand, 6811284 - 6811486
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 576  Q
    ||||||||| ||||||| | | |||||||||||| ||||||| ||  |||| ||| ||||||||||||||||||||||||||| ||||||  ||||        
T  6811284 agagcatcttcaatggggggtccttacttaacaaagaccactccctgttaaggaccctccattgaaggaagaaaaaatgagtccctattagacaacatac 6811383  T
Q  577 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 676  Q
    ||||||||||||||    |||||| ||| ||||||||||||  || || ||||||||  ||||||||||||||| ||| || ||||||| |||| |||||    
T  6811384 aactatataaggaccctttctctcttggacaactaacgggtatcatgtttaaaagaaaaaataaaatatgtattagtttgttccacttgtaaaataagta 6811483  T
Q  677 ata 679  Q
    |||    
T  6811484 ata 6811486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 536 - 680
Target Start/End: Complemental strand, 31766652 - 31766511
Alignment:
Q  536 cattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagt 635  Q
    |||| ||| ||||||||||||||| | |||| |||||    |||||||||||||  | |||||||||||| ||| |||||||  || |||||||||||||    
T  31766652 cattaaagaaagaaaaaatgagtc-caattaagcaacaaacaactatataagga--ttctctctcatgggaaaccaacgggttccatgtgtaaaagaagt 31766556  T
Q  636 aataaaatatgtattggttggtcccacttgcaaaagaagtaataa 680  Q
    |||||||||||||  |||| ||| ||||| ||||| |||| ||||    
T  31766555 aataaaatatgtacgggttagtctcacttacaaaataagttataa 31766511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 679
Target Start/End: Complemental strand, 10373949 - 10373875
Alignment:
Q  605 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    |||||||| | ||||||||| |||||||||||||||||||||||   ||||||| ||||| |||||||| |||||    
T  10373949 gcaactaatgtgtcacacgtttaaaagaagtaataaaatatgtacatgttggtctcactttcaaaagaaataata 10373875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 680
Target Start/End: Complemental strand, 27753267 - 27753197
Alignment:
Q  610 taacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataa 680  Q
    |||||| || ||||| ||||||||||||||||||||||| |  ||| || |||||||||||||||||||||    
T  27753267 taacggatctcacgtttaaaagaagtaataaaatatgtactatttgatctcacttgcaaaagaagtaataa 27753197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 477 - 557
Target Start/End: Complemental strand, 17096661 - 17096581
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgag 557  Q
    ||||||||||||||||| | |  |||||| |||||||||||| | | |||| ||| |||||||| ||||||||||||||||    
T  17096661 agagcatctccaatggggggtcattacttgacaaggaccactcctcgttaaggaccctccattggaggaagaaaaaatgag 17096581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 679
Target Start/End: Original strand, 28188005 - 28188089
Alignment:
Q  594 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    ||||||| || |||||||||||||| || |  |||||||||||||||||||||||   ||||||  ||||| ||||||||||||||    
T  28188005 ctctctcttgagcaactaacgggtctcatgcttaaaagaagtaataaaatatgtacaagttggt-tcactttcaaaagaagtaata 28188089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 679
Target Start/End: Original strand, 24326049 - 24326134
Alignment:
Q  594 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    ||||||| | || ||||||||| || ||| | |||||||||||||||||||||||||   || |||||| | |||||||| |||||    
T  24326049 ctctctcctaggtaactaacggatcccacatttaaaagaagtaataaaatatgtattatatgatcccacgtacaaaagaaataata 24326134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 469 - 676
Target Start/End: Complemental strand, 45251436 - 45251232
Alignment:
Q  469 atgcactaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaa-aaaatgagtctctattat 567  Q
    |||| ||||||| ||||| ||||| || ||||||||||||||||  |||| ||| |||| |||  | ||||| |||||||| |||||||||| || |||     
T  45251436 atgctctaagagtatctcaaatggaaggttcttacttaacaaggtacactccccgttaaggactttgcattggaggaagaaaaaaatgagtccctcttaa 45251337  T
Q  568 gcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 667  Q
    |||| |   ||||||||||||||   ||||||| |  |||||||||||||| ||||| ||||||||||||||||| ||||| | ||||||| ||||||||    
T  45251336 gcaatgtacaactatataaggac--cctctctcct--gcaactaacgggtcccacgtttaaaagaagtaataaaacatgtactagttggtctcacttgca 45251241  T
Q  668 aaagaagta 676  Q
    |||||||||    
T  45251240 aaagaagta 45251232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 474 - 589
Target Start/End: Original strand, 5423308 - 5423423
Alignment:
Q  474 ctaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacg 573  Q
    |||||||||||||||||||| | | |||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||||||||    ||| | ||||    
T  5423308 ctaagagcatctccaatggggggtccttacttaacaaggaccactccccgttaaggaccctccattgaaggaagaaaaaatgagtcctcgttaaggaacg 5423407  T
Q  574 gggaactatataagga 589  Q
    || |||||||||||||    
T  5423408 ggcaactatataagga 5423423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 477 - 679
Target Start/End: Complemental strand, 12796494 - 12796294
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 576  Q
    ||||||||| |||| |||| | ||||||||||||||| |||| ||  ||||  || |||||||| |||||||||||| |||||  ||||| ||||| |      
T  12796494 agagcatcttcaataggaggtccttacttaacaaggatcactccctgttaaataccctccattggaggaagaaaaaaagagtccttattaagcaacagac 12796395  T
Q  577 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 676  Q
    |||||||||| |||   ||||||| | ||||||||||| ||| ||  | |||| ||| |||||||||||||| | |||| ||||||||||||||||||||    
T  12796394 aactatataatgacc--ctctctcctaggcaactaacgagtctcaaatttaaaggaattaataaaatatgtactagttgatcccacttgcaaaagaagta 12796297  T
Q  677 ata 679  Q
    |||    
T  12796296 ata 12796294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 477 - 670
Target Start/End: Original strand, 1581284 - 1581476
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 576  Q
    ||||||||||||||||  | | |||| ||||||||||||||||| | |||| ||| || ||||| ||||||||||||||| |    ||||   ||||||     
T  1581284 agagcatctccaatggagggtccttatttaacaaggaccacttctcgttaaggactcttcattggaggaagaaaaaatgaattcgcattaaagaacgggc 1581383  T
Q  577 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaa 670  Q
    ||||||||||||||   ||||||| |||| |||||||||||| | ||| ||||| |||||||||||| |||| |  ||||||||||||| ||||    
T  1581384 aactatataaggaccctctctctcctgggtaactaacgggtctcgcgtttaaaa-aagtaataaaatgtgtactacttggtcccacttgtaaaa 1581476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 488 - 679
Target Start/End: Complemental strand, 29638073 - 29637882
Alignment:
Q  488 aatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataag 587  Q
    |||||||| | ||||||||| ||||||||||||   ||||  ||  |||||||  ||||||||||||||||| | |||| | ||| || || | ||||||    
T  29638073 aatgggagatccttacttaataaggaccacttcttgttaagaactttccattgggggaagaaaaaatgagtccccattaaggaacaggtaattgtataag 29637974  T
Q  588 gacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    |||   || |||| | |||||||||||  || |||||||||||||||||||||||||| ||||   ||||||| ||| ||||||||||||||    
T  29637973 gactctctttctcctaggcaactaacgaatctcacgtgtaaaagaagtaataaaatatatattatgtggtcccgcttacaaaagaagtaata 29637882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 537 - 679
Target Start/End: Original strand, 13281957 - 13282097
Alignment:
Q  537 attgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagta 636  Q
    |||||||||||||||||||||||  ||||| | || | |  ||| |||||||||   ||||||| | |||||||||||| ||  || |||||||||||||    
T  13281957 attgaaggaagaaaaaatgagtcattattaaggaatgagtcactctataaggact--ctctctcgtaggcaactaacggatcttacatgtaaaagaagta 13282054  T
Q  637 ataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    |||| ||||||| |  |||||| ||||||||||||||||||||    
T  13282055 ataatatatgtactacttggtctcacttgcaaaagaagtaata 13282097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 535 - 679
Target Start/End: Complemental strand, 22800837 - 22800695
Alignment:
Q  535 ccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaag 634  Q
    |||||| |||||||||||||| ||   ||||| | ||| || |||||||||| |||   ||||||| || ||||||||||| || ||||   ||||||||    
T  22800837 ccattggaggaagaaaaaatgggtacttattaggtaacaggcaactatataacgact--ctctctcctgagcaactaacggatcccacgatcaaaagaag 22800740  T
Q  635 taataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    |||||||||||||||  ||||| ||||||| ||||||||||||||    
T  22800739 taataaaatatgtataagttgggcccactttcaaaagaagtaata 22800695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 605 - 679
Target Start/End: Complemental strand, 7177449 - 7177375
Alignment:
Q  605 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| | |||| ||||||||| |||||||||||||    
T  7177449 gcaactaacggatctcacgtttaaaagaattaataaaatatgtactagttgatcccacttgtaaaagaagtaata 7177375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 475 - 679
Target Start/End: Original strand, 41437968 - 41438171
Alignment:
Q  475 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgg 574  Q
    ||||||||||| ||||||||| | |||| ||||||| ||||||| ||  |||| ||| | |||||| ||||||| ||||||||||   |||| | |||      
T  41437968 taagagcatcttcaatgggaggtccttagttaacaaagaccactccctgttaacgaccc-ccattggaggaagagaaaatgagtcctcattaaggaacaa 41438066  T
Q  575 ggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaag 674  Q
      || |||||||||||   |||| |  | |||||||||| |||  | ||| |||||||||||||||||||||||||   ||||||||||| ||||| |||    
T  41438067 ataattatataaggaccctctctttactaggcaactaaccggtaccgcgtttaaaagaagtaataaaatatgtattatgtggtcccacttacaaaataag 41438166  T
Q  675 taata 679  Q
    |||||    
T  41438167 taata 41438171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 559
Target Start/End: Complemental strand, 12532662 - 12532582
Alignment:
Q  479 agcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 559  Q
    |||||||| |||||||  | |||| |||| ||||| | || |||||||| ||| || ||||||||||||||||||||||||    
T  12532662 agcatctctaatgggaagtccttatttaagaaggatcgctccccattaaggacccttcattgaaggaagaaaaaatgagtc 12532582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 667
Target Start/End: Complemental strand, 14523439 - 14523317
Alignment:
Q  544 gaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaat 643  Q
    ||||||||||||||| | | ||| | |||| | |||||||||||||| | ||||||| || | ||||| |||||  ||||| ||||| || |||||||||    
T  14523439 gaagaaaaaatgagtttatgttaaggaacgagcaactatataaggactttctctctcctgagtaactatcgggtttcacgtttaaaa-aaataataaaat 14523341  T
Q  644 atgtattggttggtcccacttgca 667  Q
    ||||| |  || ||||||||||||    
T  14523340 atgtactactttgtcccacttgca 14523317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 477 - 675
Target Start/End: Complemental strand, 33766 - 33569
Alignment:
Q  477 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgg-g 575  Q
    ||||||||||||||| ||| | ||||||| |||||||||||| ||  |||| |||   |||||| |||||||||||||||||| | |||| | |||||      
T  33766 agagcatctccaatgcgaggtccttactttacaaggaccactccctgttaaggacctcccattggaggaagaaaaaatgagtccccattaaggaacggaa 33667  T
Q  576 gaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagt 675  Q
     ||||||| ||||||   |||||||||  |||||||||||||   |||| ||||||||||||||||||||| | |  || |||||| || ||||||||||    
T  33666 caactatagaaggac--tctctctcataagcaactaacgggttcaacgtttaaaagaagtaataaaatatgcactatttagtcccatttacaaaagaagt 33569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 542 - 679
Target Start/End: Original strand, 2552655 - 2552790
Alignment:
Q  542 aggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaa 641  Q
    |||||||||||||||||| |  ||| | |||||| |||||||||||||  | ||||||| | ||||||||||| ||| ||||| || |||||||| ||||    
T  2552655 aggaagaaaaaatgagtccccgttaaggaacgggtaactatataagga--ttctctctcctaggcaactaacgagtcccacgtttagaagaagtagtaaa 2552752  T
Q  642 atatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    |||||||||   ||||||| |||  |||||||||||||    
T  2552753 atatgtattatgtggtcccgcttataaaagaagtaata 2552790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 679
Target Start/End: Complemental strand, 12883597 - 12883523
Alignment:
Q  605 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||| |  ||| || ||||| ||||||||||||||    
T  12883597 gcaactaacgggtcccacgtttaaaaaaagtaataaaatatgtactatttgatctcacttacaaaagaagtaata 12883523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 667
Target Start/End: Complemental strand, 15959029 - 15958862
Alignment:
Q  499 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctc 598  Q
    ||||||||| ||||||||||   | ||||  || |||||||| ||||||||||||||| || || ||| | |||||  ||||||||||||||   || ||    
T  15959029 cttacttaagaaggaccactcatcgttaagaaccctccattggaggaagaaaaaatgaatccctgttaagaaacggacaactatataaggaccatctttc 15958930  T
Q  599 tcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 667  Q
    || || | ||||||||| || ||||| ||||| |||||||||||| |||| |  |||||| ||||||||    
T  15958929 tcttgagtaactaacggatcccacgtttaaaa-aagtaataaaatgtgtactacttggtctcacttgca 15958862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 481 - 560
Target Start/End: Original strand, 564979 - 565057
Alignment:
Q  481 catctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtct 560  Q
    ||||||||||| |  || |||||||||||||||||||| ||| || | ||| | ||||||||||||||||||||||||||    
T  564979 catctccaatgaggattccttacttaacaaggaccactccccgttgaggactc-ccattgaaggaagaaaaaatgagtct 565057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 518
Target Start/End: Original strand, 2552221 - 2552266
Alignment:
Q  473 actaagagcatctccaatgggagtttcttacttaacaaggaccact 518  Q
    ||||||||||||||||||||||| | |||||||||||||| |||||    
T  2552221 actaagagcatctccaatgggaggtccttacttaacaagggccact 2552266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 499 - 650
Target Start/End: Complemental strand, 8517235 - 8517089
Alignment:
Q  499 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctc 598  Q
    |||||||||||||||  ||||||| |||| ||  || ||||| ||||||||||||  ||||||  ||| | |||   ||||||||||||||    |||||    
T  8517235 cttacttaacaaggattacttcccgttaaggatccttcattggaggaagaaaaaagaagtctccgttaaggaacaaagaactatataagga----ctctc 8517140  T
Q  599 tcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtatt 650  Q
    || |||| || ||||||||| || || ||||| |||||||||||| ||||||    
T  8517139 tcctgggtaattaacgggtcccatgtttaaaa-aagtaataaaatgtgtatt 8517089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 679
Target Start/End: Original strand, 4395654 - 4395727
Alignment:
Q  606 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    ||||||||  ||| ||||| ||||||||||||||||| |||||||  |||||  ||  ||||||||||||||||    
T  4395654 caactaacatgtctcacgtttaaaagaagtaataaaacatgtattaattggtttcatctgcaaaagaagtaata 4395727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 679
Target Start/End: Original strand, 175210 - 175354
Alignment:
Q  535 ccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaag 634  Q
    |||||| ||||||||||||||||| || |||| | |||| | |||||||||||| |   ||||||| |  ||||||||  |||  ||||| |||||||||    
T  175210 ccattgtaggaagaaaaaatgagtttccattaaggaacgagcaactatataagggccctctctctcctaagcaactaataggtttcacgtttaaaagaag 175309  T
Q  635 taataaaatatgtattggttggtcccacttgcaaaagaagtaata 679  Q
    |||||||||||||| |  ||| |||||||  ||||||||||||||    
T  175310 taataaaatatgtactatttgatcccactaccaaaagaagtaata 175354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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