View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_low_20 (Length: 304)
Name: NF11069_low_20
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 1714725 - 1715004
Alignment:
| Q |
7 |
gaagcataggatctggcatggattcaacgcttgaaatgacactgcaaattaattaaaagcacaatgaatggaccattcaatgatgaaaaatagcacaaat |
106 |
Q |
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| T |
1714725 |
gaagcataggatctggcatggattcaacgcttgaaatgacactgcaaattaattaaaagcacaatgaatggaccattcaatgatgaaaaatagcacaaat |
1714824 |
T |
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| Q |
107 |
ctaatttaaaaagtatttgtttttgctttgcttactcattgcagactgtggaagattcacctattgtttcaagtttttccaactcttcctgcatcatagg |
206 |
Q |
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| T |
1714825 |
ctaatttaaaaagtatttgtttttgctttgcttactcattgcagactgtggaagattcacctattgtttcaagtttttccaactcttcctgcatcatagg |
1714924 |
T |
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| Q |
207 |
ttcaaattattcaatatcaatttaatctagnnnnnnnnncttgagggaatcaatttattcaatatataatatatgtaaatta |
288 |
Q |
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| T |
1714925 |
ttcaaattattcaatatcaatttattctag--tttttttcttgagggaatcaacttattcaatatataatatatgtaaatta |
1715004 |
T |
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