View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_low_27 (Length: 254)
Name: NF11069_low_27
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 27770237 - 27770447
Alignment:
| Q |
22 |
acctaattaacaagattttattttctttggtttcaactcaatcaaaacatgaacggtctgaatcat---attaattaataaccgagtaatgttgtagaca |
118 |
Q |
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| T |
27770237 |
acctaattaacaagattttattttgtttggtttcaactcaatcaaaacaagaacggtctgaatcatctgattaattaataaccgagaaatgttgtagaca |
27770336 |
T |
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| Q |
119 |
aggatcatcttccttaatagtaggaaagacacatatgtttctttctacatctctgatctcctgaccctcactccctctctct--cacacactcaaaggat |
216 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||| |||||||||||||||| |
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| T |
27770337 |
aggatcatcttccttaatagtaggaaagacacata--tttctttttacatctctgatct-----ccctccctccctctctctcacacacactcaaaggat |
27770429 |
T |
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| Q |
217 |
agaggatctaattcctaa |
234 |
Q |
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|||||||| ||||||||| |
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| T |
27770430 |
agaggatccaattcctaa |
27770447 |
T |
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