View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069_low_28 (Length: 252)

Name: NF11069_low_28
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069_low_28
NF11069_low_28
[»] chr7 (1 HSPs)
chr7 (203-252)||(46795063-46795112)
[»] chr8 (1 HSPs)
chr8 (76-188)||(10124167-10124279)
[»] chr3 (5 HSPs)
chr3 (18-188)||(22350291-22350461)
chr3 (76-115)||(52612945-52612984)
chr3 (18-115)||(43073864-43073961)
chr3 (76-115)||(31524768-31524807)
chr3 (73-115)||(55167503-55167545)
[»] chr2 (2 HSPs)
chr2 (76-115)||(4636879-4636918)
chr2 (77-107)||(14849234-14849264)
[»] chr1 (2 HSPs)
chr1 (76-187)||(4863508-4863619)
chr1 (73-115)||(38548083-38548125)
[»] chr5 (2 HSPs)
chr5 (79-115)||(1160526-1160562)
chr5 (77-188)||(10430264-10430375)
[»] chr6 (1 HSPs)
chr6 (79-138)||(14459371-14459430)


Alignment Details
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 46795063 - 46795112
Alignment:
Q  203 acccatgcaataaacgctcgatcagattgaacaacacaaacgaaaaaacc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46795063 acccatgcaataaacgctcgatcagattgaacaacacaaacgaaaaaacc 46795112  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 188
Target Start/End: Complemental strand, 10124279 - 10124167
Alignment:
Q  76 ccactccaacactcccaatgaataaacaaatttggcggcacaagaaaatttaagtctaaccaatccataagtttttgccaaattttcatagccatatcac 175  Q
    ||||||||||||||||||||||||| ||| ||||| ||||  | |||||| || |  ||||| ||||| || ||  ||||||||||| ||||| ||||||    
T  10124279 ccactccaacactcccaatgaataaccaagtttggaggcattataaaattcaaattcaaccattccattagattcagccaaattttcctagccgtatcac 10124180  T
Q  176 aatgaagaaaaat 188  Q
    ||||||| |||||    
T  10124179 aatgaaggaaaat 10124167  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 22350461 - 22350291
Alignment:
Q  18 aattgccgcttgccaaatcaacaacaacccctttctaattttcttatgcaggtgacctccactccaacactcccaatgaataaacaaatttggcggcaca 117  Q
    ||||||||||||||||||||    ||||||||| |  |||||||| ||||    ||| | ||| ||||||||||||||||||||||| ||||| |||| |    
T  22350461 aattgccgcttgccaaatcattctcaaccccttccggattttcttgtgcataacaccactacttcaacactcccaatgaataaacaagtttgggggcata 22350362  T
Q  118 agaaaatttaagtctaaccaatccataagtttttgccaaattttcatagccatatcacaatgaagaaaaat 188  Q
    |  ||||| ||||||| |||   |||||| ||   |||||||  | ||||||| |||||||||||||||||    
T  22350361 atgaaattcaagtctagccacgacataagcttcatccaaattcgcctagccatctcacaatgaagaaaaat 22350291  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 52612945 - 52612984
Alignment:
Q  76 ccactccaacactcccaatgaataaacaaatttggcggca 115  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  52612945 ccactccaacactcccaatgaattaacaaatttggcggca 52612984  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 43073864 - 43073961
Alignment:
Q  18 aattgccgcttgccaaatcaacaacaacccctttctaattttcttatgcaggtgacctccactccaacactcccaatgaataaacaaatttggcggca 115  Q
    ||||||||||||||||||||    ||| ||||| ||||||||||| | ||    ||| ||||||||||| ||||||||||||||||| ||||| ||||    
T  43073864 aattgccgcttgccaaatcatacgcaaacccttcctaattttcttgttcattacaccaccactccaacattcccaatgaataaacaagtttggtggca 43073961  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 31524807 - 31524768
Alignment:
Q  76 ccactccaacactcccaatgaataaacaaatttggcggca 115  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  31524807 ccactccaacactcccaatggataaacaaatttggaggca 31524768  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 55167503 - 55167545
Alignment:
Q  73 cctccactccaacactcccaatgaataaacaaatttggcggca 115  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||    
T  55167503 cctccactccaacactcccaatggataaataaatttggaggca 55167545  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 4636879 - 4636918
Alignment:
Q  76 ccactccaacactcccaatgaataaacaaatttggcggca 115  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  4636879 ccactccaacactcccaatgaataaacaaattaggcggca 4636918  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 107
Target Start/End: Original strand, 14849234 - 14849264
Alignment:
Q  77 cactccaacactcccaatgaataaacaaatt 107  Q
    |||||||||||||||||||||||||||||||    
T  14849234 cactccaacactcccaatgaataaacaaatt 14849264  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 4863508 - 4863619
Alignment:
Q  76 ccactccaacactcccaatgaataaacaaatttggcggcacaagaaaatttaagtctaaccaatccataagtttttgccaaattttcatagccatatcac 175  Q
    |||||||||||||| |||||||||||||||||||  ||||  | |||||| ||||| |||||   ||| |   |   |||||||||||||||||||||||    
T  4863508 ccactccaacactctcaatgaataaacaaatttgaaggcattataaaattcaagtccaaccacctcattaacatcatccaaattttcatagccatatcac 4863607  T
Q  176 aatgaagaaaaa 187  Q
    |||||| |||||    
T  4863608 aatgaataaaaa 4863619  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 38548125 - 38548083
Alignment:
Q  73 cctccactccaacactcccaatgaataaacaaatttggcggca 115  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||    
T  38548125 cctccactccaacactcccaatggataaataaatttggaggca 38548083  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 1160562 - 1160526
Alignment:
Q  79 ctccaacactcccaatgaataaacaaatttggcggca 115  Q
    |||||||| ||||||||||||||||||||||||||||    
T  1160562 ctccaacattcccaatgaataaacaaatttggcggca 1160526  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 10430375 - 10430264
Alignment:
Q  77 cactccaacactcccaatgaataaacaaatttggcggcacaagaaaatttaagtctaaccaatccataagtttttgccaaattttcatagccatatcaca 176  Q
    |||||||||| ||||||||||||||||||||||| ||||  | ||| || ||||| |||||  ||||||| ||   |||||   || |||||| ||| ||    
T  10430375 cactccaacattcccaatgaataaacaaatttgggggcatgataaagttcaagtccaaccaccccataagcttcaaccaaacactcctagccaaatcgca 10430276  T
Q  177 atgaagaaaaat 188  Q
    ||||||||||||    
T  10430275 atgaagaaaaat 10430264  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 14459430 - 14459371
Alignment:
Q  79 ctccaacactcccaatgaataaacaaatttggcggcacaagaaaatttaagtctaaccaa 138  Q
    |||||||| |||||||| ||||||||||| ||||||| || |||||| || |||||||||    
T  14459430 ctccaacattcccaatggataaacaaattcggcggcataacaaaattcaaatctaaccaa 14459371  T

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