View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_low_29 (Length: 250)
Name: NF11069_low_29
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 2274362 - 2274531
Alignment:
| Q |
5 |
atagtataaaggtaaaagaaaggatttgattaccactgattaattgaatccattatttggcagcacacacagagcttcatttggtgaatataggttgacg |
104 |
Q |
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| T |
2274362 |
atagtataaaggtaaaagaaaggatttgattaccactgattaattgaatccattatttggcagcacacacagagcttcatttggtgaatataggttgacg |
2274461 |
T |
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| Q |
105 |
actcttttgtttgtactttgactgaataggttgcgacttaaataggtgtgtgcagtaacaaacatcacag |
174 |
Q |
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| T |
2274462 |
actcttttgtttgtactttgactggataggttgcgacttaaataggtgtgtgcagtaacaaacatcacag |
2274531 |
T |
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Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 2272802 - 2272950
Alignment:
| Q |
1 |
acaaatagtataaaggtaaaagaaaggatttgattaccactgattaattgaatccattatttggcagcacacacagagcttcatttggtgaatataggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272802 |
acaaatagtataaaggtaaaagaaaggatttgattaccactgattaattgaatccattatttggcagcacacacagagcttcatttggtgaatataggtt |
2272901 |
T |
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| Q |
101 |
gacgactcttttgtttgtactttgactgaataggttgcgacttaaatag |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272902 |
gacgactcttttgtttgtactttgactgaataggttgcgacttaaatag |
2272950 |
T |
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