View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_low_30 (Length: 248)
Name: NF11069_low_30
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_low_30 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 16791772 - 16792012
Alignment:
| Q |
8 |
cagcagagattcaatggctttcatgactagtatcttatgtgcttcttccccccataccaataatattcatccatattttctccaagatgtatatgcatag |
107 |
Q |
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| T |
16791772 |
cagcacagattcaatggctttcatgactagtatcttatgtgcttcttccccccataccaataatattcatccatattttctccaagatgtatatacatag |
16791871 |
T |
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| Q |
108 |
agaaattaactttgatacactgtctctataaatattttttacaccgtcaaccaatcataaactgtcatttctatgacttttaacaaatatataattaatt |
207 |
Q |
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| T |
16791872 |
agaaattaactttgatacactgtctcaataaaaattttttacaccgtcaaccaatcataaactgtcatttctatgacttttaacaaatatataattaatt |
16791971 |
T |
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| Q |
208 |
tgattgacggtgtaaaaaatatttatgttgcaagtgtatat |
248 |
Q |
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| T |
16791972 |
tgattgacggtgtaaaaaatatttatgttgcaagtgtatat |
16792012 |
T |
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