View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_low_31 (Length: 244)
Name: NF11069_low_31
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 27770567 - 27770795
Alignment:
| Q |
1 |
cttaatagtgtacaatattgagataggatgtcgaatattgttatgtccaattaataaatgtgaagttcttaattcaaaaatgaattcttacagttaagat |
100 |
Q |
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| T |
27770567 |
cttaatagtgtacaatattgagataggatgtcgaatattgt-atgtccaattaataaatgtgaagtttttaattcaaaaatgaattcttacagttaagat |
27770665 |
T |
|
| Q |
101 |
atgtatctgcattcacgcac----tgaatgcattggtgaatggtgggagttaaatttgataggacactttataaaaatgcaaatttaaactttc-ttgta |
195 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || |||| || || |
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| T |
27770666 |
atgtatctgcattcacgcacgcactgaa-gcattggtgaatggtgagagttaaatttgataggacacttttcaaaaatgcaaattttaattttcttttta |
27770764 |
T |
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| Q |
196 |
aaatctaaattaccaaacttaatatctaaac |
226 |
Q |
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||||||||||||||||||||| ||||||||| |
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| T |
27770765 |
aaatctaaattaccaaacttattatctaaac |
27770795 |
T |
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