View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_low_33 (Length: 241)
Name: NF11069_low_33
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_low_33 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44614694 - 44614472
Alignment:
| Q |
1 |
atatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44614694 |
atatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaac |
44614595 |
T |
|
| Q |
101 |
aaagaaagatatttttaatattaaaagtattcatgattgagttaataaaccacaatttcagtaaaaaggaacataagtatacctgccaggtagaattact |
200 |
Q |
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| T |
44614594 |
aaagaaagatattttcaatattaaaagtattcatgattgagttaataaaccacaatttcagtaaaaaggaacataagtatacctgccaggtagaattact |
44614495 |
T |
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| Q |
201 |
gcttccaccacatgatgactttc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
44614494 |
gcttccaccacatgatgactttc |
44614472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 44793875 - 44794053
Alignment:
| Q |
1 |
atatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44793875 |
atatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaac |
44793974 |
T |
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| Q |
101 |
aaagaaagatatttttaatattaaaagtattcatgattgagttaataaaccacaatttcagtaaaaaggaacataagta |
179 |
Q |
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| T |
44793975 |
aaagaaagatattttcaatattaaaagtattcatgattgagttaataaaccacaatttcagtaaaaagaaatataagta |
44794053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 11542496 - 11542579
Alignment:
| Q |
8 |
ttatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaattatagaaatgctttagttacaca |
91 |
Q |
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||||| |||||||||||||||| ||| | ||||||| || |||||||||||||||||||| | ||| ||||||||||||||| |
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| T |
11542496 |
ttatgggattgatattgtctttgatgacatgttattgatcactgagaaatgcaatacaaattgttgaagtgctttagttacaca |
11542579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 27167 - 27267
Alignment:
| Q |
1 |
atatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaac |
100 |
Q |
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||||||||||| ||||||||||| ||||| ||| ||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
27167 |
atatatattataagattgatattttctttgatgaaagattattaaacactgagaaatgcaatacaaattgtagaaatgctttagttacaaatatatcaac |
27266 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
27267 |
a |
27267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 171625 - 171525
Alignment:
| Q |
1 |
atatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaac |
100 |
Q |
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||||||||||| ||||||||||| ||||| ||| ||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
171625 |
atatatattataagattgatattttctttgatgaaagattattaaacactgagaaatgcaatacaaattgtagaaatgctttagttacaaatatatcaac |
171526 |
T |
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| Q |
101 |
a |
101 |
Q |
| |
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| |
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| T |
171525 |
a |
171525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 29505542 - 29505639
Alignment:
| Q |
4 |
tatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaaca |
101 |
Q |
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|||||||||||||||||| ||||||| ||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
29505542 |
tatattatgagattgatactgtctttgatgacagattattgaacattgagaaatgcaatacaaattgtagaaaatgtttagttacacatatatcaaca |
29505639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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