View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_low_5 (Length: 513)
Name: NF11069_low_5
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 24 - 498
Target Start/End: Original strand, 8944437 - 8944911
Alignment:
| Q |
24 |
gagtaaaccatcaaattggcttatgattttgtgaagttcttttaaataggtatgtcaaattatgaatatttcaaatgttacatgacgtcgttttaatgtt |
123 |
Q |
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| T |
8944437 |
gagtaaaccatcaaattggcctatgattttgtgaagttcttttaaataggtatgtcaaattatgaatatttcaaatgttacatgacgtcgttttaatgtt |
8944536 |
T |
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| Q |
124 |
actcacattcatccttttgtcaaacttagttgcttaacatcgttttactgggacgaaattgataataagtagtaaaatataaggatgtaaacgaaacgtg |
223 |
Q |
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| T |
8944537 |
actcacattcatccttttgtcaaacttagtttcttagcatctttttcctgagacgaaattgatactaagtggttaaatataaggatgtaagcgaaacgtg |
8944636 |
T |
|
| Q |
224 |
ataacatgaaagtttgacagaaatatagatatgagtaatgtttcaccgagtaagaggcgtatttgaaatattcataatctcatggaccatttgaaagcgc |
323 |
Q |
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| T |
8944637 |
ttaacgataaagtttgacagaaagatagatatgatcaatgtttcaccgagtaagagacgtatttaaaatattcataatctcatggaccatttgaaagcgc |
8944736 |
T |
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| Q |
324 |
aataaattacatggataaatttggtggtttcctttgattatatctaattgagtttatgtttttgaagatgcagaaatgaaaagtctaactagaatctgtt |
423 |
Q |
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| T |
8944737 |
aataaattacatggatacatttggtggtttcctttcattgtatctaattgagtttatgtttttgacgatgcagaaatgaagagtctaactagaatctgtt |
8944836 |
T |
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| Q |
424 |
tgcattgaagttgaggttttctttcatctctagttccatcaatttcaatttttccgtctctatttttaatctgtg |
498 |
Q |
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| T |
8944837 |
tgcattgaagttgaggttttctttcatctctagttccatcaatttcaatttttccgtctctatttttaatctgtg |
8944911 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 482
Target Start/End: Original strand, 21685541 - 21685579
Alignment:
| Q |
444 |
ctttcatctctagttccatcaatttcaatttttccgtct |
482 |
Q |
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| T |
21685541 |
ctttcatctctagttccatcaatttcactttttctgtct |
21685579 |
T |
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