View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_low_6 (Length: 512)
Name: NF11069_low_6
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 20 - 504
Target Start/End: Original strand, 34473413 - 34473897
Alignment:
| Q |
20 |
ctatgcccatgaaatttatgataattttcaaattagtcatttcccagtttctgattagtcacttcctaacaacatgaaagcaaggtaaaatcagaccaac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34473413 |
ctatgcccatgaaatttatgataattttcaaattagtcatttcccagtttctgattagtcacttcctaacaacatgaaagcaaagtaaaatcagaccaac |
34473512 |
T |
|
| Q |
120 |
ttctatcaaaaagaaaaccacacaagcttcattctttattttcacatacatccaaagtgagaaggataacttatattacaagttattattgcttattttc |
219 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
34473513 |
ttctatccaaaagaaaaccacacaagcttcattctttattttcacatacatccaaaatgagaagggtaacttatattacaagttattattgcttatcttc |
34473612 |
T |
|
| Q |
220 |
ctgtgcttattggatctatgagaagtgcaaaaacacagtctttcaacagttccccatttgtgtctttatcctcgtagttttcgtaggtgaactcggttat |
319 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34473613 |
ctgtgcttattggatctatgagaagtgcaacaacatagtctttcaacagttccccatttgtgtatttatcctcgtagttttcgtaggtgaactcggttat |
34473712 |
T |
|
| Q |
320 |
tcgtgccacattaagaatacattcaagcacagggttggggatttagtctaacttgaggcactcttcatttatatccatccaaaaatcttctatgtccttg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34473713 |
tcgtgccacattaagaatacattcaagcacagggttggggatgtagtctaacttgaggaactcttcatttatatccatccaaaaatcttcaatgtccttg |
34473812 |
T |
|
| Q |
420 |
ttaatgtgcttataggcctcttcttgtgacatgttgtattgcttcatgcaacattctactgctgaagcaatatgcaccctttgct |
504 |
Q |
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| T |
34473813 |
ttaatgtgcttataggcctcttcttgtgacatgttgtattgcttcatgcaacattcaactgctgcagcaacatgcaccctttgct |
34473897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 276 - 501
Target Start/End: Original strand, 34448397 - 34448622
Alignment:
| Q |
276 |
tttgtgtctttatcctcgtagttttcgtaggtgaactcggttattcgtgccacattaagaatacattcaagcacagggttggggatttagtctaacttga |
375 |
Q |
| |
|
||||||| ||||||||| |||||||||| | ||||| || | ||| |||||||| | |||| |||||||||| || | ||||| | ||||||||||| |
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| T |
34448397 |
tttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaacttga |
34448496 |
T |
|
| Q |
376 |
ggcactcttcatttatatccatccaaaaatcttctatgtccttgttaatgtgcttataggcctcttcttgtgacatgttgtattgcttcatgcaacattc |
475 |
Q |
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| T |
34448497 |
gacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattc |
34448596 |
T |
|
| Q |
476 |
tactgctgaagcaatatgcacccttt |
501 |
Q |
| |
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||||| ||||||| |||||| |||| |
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| T |
34448597 |
cactgcagaagcaacatgcactcttt |
34448622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 329 - 501
Target Start/End: Original strand, 34459683 - 34459855
Alignment:
| Q |
329 |
attaagaatacattcaagcacagggttggggatttagtctaacttgaggcactcttcatttatatccatccaaaaatcttctatgtccttgttaatgtgc |
428 |
Q |
| |
|
||||||||||||||||||||| || | || || | || ||| || |||||||||||||| ||| | |||| |||||||| || |||||| |||| | |
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| T |
34459683 |
attaagaatacattcaagcactggccttggaatgtggtgtaattttaggcactcttcattcataactctccataaatcttcaatctccttgagaatgagt |
34459782 |
T |
|
| Q |
429 |
ttataggcctcttcttgtgacatgttgtattgcttcatgcaacattctactgctgaagcaatatgcacccttt |
501 |
Q |
| |
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||||| |||||||||||||| |||| ||||||||||||||||| || ||||| || |||| ||||||||||| |
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| T |
34459783 |
ttataagcctcttcttgtgatatgtcatattgcttcatgcaacaatcaactgcagaggcaacatgcacccttt |
34459855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 225 - 349
Target Start/End: Original strand, 34483710 - 34483834
Alignment:
| Q |
225 |
cttattggatctatgagaagtgcaaaaacacagtctttcaacagttccccatttgtgtctttatcctcgtagttttcgtaggtgaactcggttattcgtg |
324 |
Q |
| |
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||||| |||||||| || ||||||| || | ||||||| |||||| | ||||||| ||||||||| |||||||||| |||||||| |||||||||| |
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| T |
34483710 |
cttataggatctataagtagtgcaacaatgtaatctttcatcagttctgcttttgtgtatttatcctcaaagttttcgtatgtgaactctgttattcgtg |
34483809 |
T |
|
| Q |
325 |
ccacattaagaatacattcaagcac |
349 |
Q |
| |
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|||||||||||||| ||||||||| |
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| T |
34483810 |
ccacattaagaataatttcaagcac |
34483834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 225 - 502
Target Start/End: Original strand, 1593083 - 1593360
Alignment:
| Q |
225 |
cttattggatctatgagaagtgcaaaaacacagtctttcaacagttccccatttgtgtctttatcctcgtagttttcgtaggtgaactcggttattcgtg |
324 |
Q |
| |
|
||||| |||||||| |||||||||| || |||||| || |||||||| || || | |||||||| ||| | ||| || ||||||||||||| || || |
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| T |
1593083 |
cttatgggatctattagaagtgcaataatgtggtcttttaagagttccccgttggtatatttatccttgtaatcttcataagtgaactcggttactcttg |
1593182 |
T |
|
| Q |
325 |
ccacattaagaatacattcaagcacagggttggggatttagtctaacttgaggcactcttcatttatatccatccaaaaatcttctatgtccttgttaat |
424 |
Q |
| |
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| || || | |||||||||||||| | |||||||| ||||||||| ||||||||||| |||||||||||||||| | ||| ||||||||||| || |
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| T |
1593183 |
ctacgttcaccatacattcaagcacggacttggggatgaagtctaactcgaggcactctttatttatatccatccaaccaatttcaatgtccttgttgat |
1593282 |
T |
|
| Q |
425 |
gtgcttataggcctcttcttgtgacatgttgtattgcttcatgcaacattctactgctgaagcaatatgcaccctttg |
502 |
Q |
| |
|
| | ||||| || |||||| |||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||| |
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| T |
1593283 |
gagtttatatgcatcttctggtgacatgttgtattgcttcatgcaacactcaactgctgaagcaacatgctccctttg |
1593360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 256 - 504
Target Start/End: Complemental strand, 6132420 - 6132172
Alignment:
| Q |
256 |
agtctttcaacagttccccatttgtgtctttatcctcgtagttttcgtaggtgaactcggttattcgtgccacattaagaatacattcaagcacagggtt |
355 |
Q |
| |
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||||||||| || |||||||||||||| ||||||||| |||||||||| |||||||||| || ||| |||||||||| ||||| ||| | ||| ||| | |
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| T |
6132420 |
agtctttcagcaattccccatttgtgtatttatcctcaaagttttcgtatgtgaactcggctactcgcgccacattaacaatactttcgaccactgggct |
6132321 |
T |
|
| Q |
356 |
ggggatttagtctaacttgaggcactcttcatttatatccatccaaaaatcttctatgtccttgttaatgtgcttataggcctcttcttgtgacatgttg |
455 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||| ||| | |||||| ||||||| || || || |||| | || || || || ||||||||||| | |
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| T |
6132320 |
tgggatgcagtctaatttgagacactcttcattcataactatccaataatcttcgatctctttcagaatgagtttgtaagcttcctcttgtgacatatca |
6132221 |
T |
|
| Q |
456 |
tattgcttcatgcaacattctactgctgaagcaatatgcaccctttgct |
504 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||| |||||| ||||||| |
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| T |
6132220 |
tattgcttcatgcaacattcaactgcagaagcaacatgcactctttgct |
6132172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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