View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069_low_9 (Length: 433)
Name: NF11069_low_9
Description: NF11069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 26870987 - 26871418
Alignment:
| Q |
1 |
tcaattggtatcagaactgattgtcgttggcctggaaagggcttcctgtggaaggactgactggaaaggccgagtaaaacaacagagtatagccgccggg |
100 |
Q |
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| T |
26870987 |
tcaattggtatcagaattgattgtcgttggcttggaaagggcttcctatggaaggactgactggaaaggccgagtaaaacaacagagtatagccgccggg |
26871086 |
T |
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| Q |
101 |
aatcagctctcagggacggggctgtggtagggacttggatgttatgagcgtgcccgagtcccatattgagtcgtttgagtgagatgctaagtgaagtgtt |
200 |
Q |
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| T |
26871087 |
aatcagctctcagggacggggctgtggtagggacttggatgttatga-cgtgcccgtgtcccatattgagtcgtttgagtgagatgctaagtgaagtgtt |
26871185 |
T |
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| Q |
201 |
taactgaccctcttaagggaaggttctccaagtgtttggatacttgctacattgttattaaatatttactttggtgccaactgtggtaagtttgtgcttc |
300 |
Q |
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| T |
26871186 |
taactgacccccttaagggaaggttctccaagtgtttggataattgctacattgttattaagtatttactttggtgccaactgtggtaagtttgtgcttc |
26871285 |
T |
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| Q |
301 |
aaaacatcaagtttttgagctgaataataatcatctcaaacttgggcattttaacgcaaatatactaggatttctcaatgaagacttatggactacggta |
400 |
Q |
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|||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26871286 |
aaaacatcaagtttatgagctgaacaacaatcatctcaaacttgggcatttaaacgcaaatatactaggatttctcaatgaagacttatggacgacggta |
26871385 |
T |
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| Q |
401 |
tgcgatgtttttctatgcggctttgaatttttt |
433 |
Q |
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| T |
26871386 |
tgcgatgtttttctatgcggctttgaatttttt |
26871418 |
T |
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