View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1106_high_1 (Length: 328)
Name: NF1106_high_1
Description: NF1106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1106_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 97 - 276
Target Start/End: Original strand, 48794473 - 48794652
Alignment:
| Q |
97 |
ggaactccaaatctggttctacaagaaggagaagatgaagaagtaaagaaggattgagattgtggcggcgaaaattgaattgtgtgggatgaaagtctag |
196 |
Q |
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| T |
48794473 |
ggaactccaaatctggttctacaagaaggagaagatgaagaagtaaagaaggattgagattgtggcggcgaaaattgaattgtgtgggatgaaagtctag |
48794572 |
T |
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| Q |
197 |
aattccgtgaatgttggaacatagataagtgtgttccgattgaaaacgtagccatttcttccaccaactgtatgcaacag |
276 |
Q |
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| T |
48794573 |
aattccgtgaatgttggaacatagataagtgtgttccgattgaaaacgtagccatttcttccaccaactgtatgcaacag |
48794652 |
T |
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