View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1106_low_1 (Length: 443)
Name: NF1106_low_1
Description: NF1106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1106_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 226 - 437
Target Start/End: Complemental strand, 33735593 - 33735379
Alignment:
| Q |
226 |
ctcttcagggaagaaattgcatcctaaacatcctgctatgttgcattcccggcaagaaactatgttcactgccggcactattcgttctaagctgctgctg |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33735593 |
ctcttcagggaagaaattgcatcctaaacatcctgctatgttgcattcccggcaagaaactatgttcactgccggcactattcgttctaagctgctgctg |
33735494 |
T |
|
| Q |
326 |
ct---tccgacagtggagtccgtgggggaaaattcaggtatggaatacgcggtggaggtggagccggagactacgttggttaaagcagcaacgatggcgg |
422 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33735493 |
ctgcttccgacagtggaatccgtgggggaaaattcaggtatggaatacgcggtggaggtggagccggagactacgttggttaaagcagcaacgatggcgg |
33735394 |
T |
|
| Q |
423 |
agagttcttgatcgg |
437 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33735393 |
agagttcttgatcgg |
33735379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 33720930 - 33720880
Alignment:
| Q |
226 |
ctcttcagggaagaaattgcatcctaaacatcctgctatgttgcattcccg |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33720930 |
ctcttcagggaagaaattgcatcctaaacatcctgctatgttgcattcccg |
33720880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 33718926 - 33718873
Alignment:
| Q |
226 |
ctcttcagggaagaaattgcatcctaaacatcctgctatgttgcattcccggca |
279 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33718926 |
ctcttgagagaagaaattgcatcctaaacatcctgctatgttgcattcgcggca |
33718873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 437
Target Start/End: Complemental strand, 33720835 - 33720770
Alignment:
| Q |
372 |
cggtggaggtggagccggagactacgttggttaaagcagcaacgatggcggagagttcttgatcgg |
437 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |||||| | |||||||||||||||| |
|
|
| T |
33720835 |
cggtggaggtggaaccggagactacgttggttagggcagcgacgatgactgagagttcttgatcgg |
33720770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 437
Target Start/End: Complemental strand, 33750262 - 33750197
Alignment:
| Q |
372 |
cggtggaggtggagccggagactacgttggttaaagcagcaacgatggcggagagttcttgatcgg |
437 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| |||| |||||| | |||||||||||||||| |
|
|
| T |
33750262 |
cggtggaggtggagccggagacgacattggttaaggcagagacgatgacagagagttcttgatcgg |
33750197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 327
Target Start/End: Complemental strand, 33750399 - 33750298
Alignment:
| Q |
226 |
ctcttcagggaagaaattgcatcctaaacatcctgctatgttgcattcccggcaagaaactatgttcactgccggcactattcgttctaagctgctgctg |
325 |
Q |
| |
|
|||||| |||||||||| ||||||||| |||||||| |||||||||||| |||| | |||||||| | | || || |||| |||||||||||||||| |
|
|
| T |
33750399 |
ctcttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttctatgttcgcaggtggaacaattctttctaagctgctgctg |
33750300 |
T |
|
| Q |
326 |
ct |
327 |
Q |
| |
|
|| |
|
|
| T |
33750299 |
ct |
33750298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 8507891 - 8507790
Alignment:
| Q |
101 |
gtccaaatctccgttcgtaaagatatctaaacctcctattgatttgtctagtctactccttgctcatgcatggggtgtagcatttgttaggaagtagtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| |||||| |
|
|
| T |
8507891 |
gtccaaatctccgttcgtaaagatatctaaacctcctattgatttgtctagtctactccttgatgatgcatggggtgtaggatttgttaggaactagtct |
8507792 |
T |
|
| Q |
201 |
cc |
202 |
Q |
| |
|
|| |
|
|
| T |
8507791 |
cc |
8507790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 31017316 - 31017257
Alignment:
| Q |
138 |
attgatttgtctagtctactccttgctcatgcatggggtgtagcatttgttaggaagtag |
197 |
Q |
| |
|
|||||||||| |||| | ||||||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
31017316 |
attgatttgtatagtgtgctccttgcttatgcatgaggtgtagcatttgttagggagtag |
31017257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University