View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1106_low_11 (Length: 251)
Name: NF1106_low_11
Description: NF1106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1106_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 45583994 - 45583826
Alignment:
| Q |
1 |
ccatcaacgattgtaaggtatcagccattctgaaacatgatatgatgcagttttaataaatgtgttttcagagatagagagatgcatgaaagtaagataa |
100 |
Q |
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| T |
45583994 |
ccatcaacgattgtaaggtatcagccattctgaaacatgatatgatgcagttttaataaatgtgttttcagagatagagagatgcatgaaagtaagataa |
45583895 |
T |
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| Q |
101 |
taatttgagtgataaattcccatttgtctgtttgagagaggaatctatcattatcaatacattgttgtg |
169 |
Q |
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| T |
45583894 |
taatttgagtgataaattcccatttgtctgtttgagagaggaatctatcattatcaatacattgttgtg |
45583826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 45583788 - 45583745
Alignment:
| Q |
199 |
ttcatgtgtgtgcagatgaagggaagttgcacatatagaataat |
242 |
Q |
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| T |
45583788 |
ttcatgtgtgtgcagatgaagggaagttgcacatatagaataat |
45583745 |
T |
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