View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1106_low_15 (Length: 208)
Name: NF1106_low_15
Description: NF1106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1106_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 42443069 - 42442951
Alignment:
| Q |
1 |
catcgatatcctcaatttcaaccccgataccctctcactcaaacctcaaccttcactctccttcgatcacccttacccaccaaccaaactcatgttccat |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42443069 |
catcgatattctcaatttcaaccccgataccctctcactcaaacctcaaccttcactctccttcgatcacccttacccaccaaccaaactcatgttccat |
42442970 |
T |
|
| Q |
101 |
cccgccacacattcatctc |
119 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
42442969 |
cccgccacacattcttctc |
42442951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 17047489 - 17047406
Alignment:
| Q |
12 |
tcaatttcaaccccgataccctctcactcaaacctcaaccttcactctccttcgatcacccttacccaccaaccaaactcatgtt |
96 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
17047489 |
tcaatttcaacca-gataccctctcactcaaacctcatccttcactctccttcgatcatccttacccacccaccaaactcatgtt |
17047406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University