View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1106_low_3 (Length: 362)
Name: NF1106_low_3
Description: NF1106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1106_low_3 |
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| [»] scaffold0722 (1 HSPs) |
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Alignment Details
Target: scaffold0722 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 142 - 266
Target Start/End: Original strand, 5725 - 5850
Alignment:
| Q |
142 |
ttatcgaatatattatatacttgacaattggtggtgaaagaaaaaagtatacatatatcctccttnnnnnnnnn--gtttacatattatggtcctgaact |
239 |
Q |
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||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5725 |
ttatcgaatatattatataattgacaattg-tggtggaagaaaaaagtatacatatatcctccttaaaaaaaaaaagtttacatattatggtcctgaact |
5823 |
T |
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| Q |
240 |
cattatcatcatcatgtactacatttt |
266 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5824 |
cattatcatcatcatgtactacatttt |
5850 |
T |
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