View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1106_low_6 (Length: 315)
Name: NF1106_low_6
Description: NF1106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1106_low_6 |
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| [»] scaffold1819 (2 HSPs) |
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| [»] scaffold1104 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 34406729 - 34406599
Alignment:
| Q |
99 |
ataaagccaccacaaactcctactcctttctccatcactacttattcttctactggagaaggaggaacaaggagaaagtgtaggttacaatgtgtatgca |
198 |
Q |
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| T |
34406729 |
ataaagccaccacaaactcctactcctttctccatcactacttattcatctactggagaaggaggaacaaggagaaagtgtaggttacaatgtgtatgca |
34406630 |
T |
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| Q |
199 |
tgcaaaacatgtaacaaatctttcacttcat |
229 |
Q |
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| T |
34406629 |
tgcaaaacatgtaacaaatctttcacttcat |
34406599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 34710287 - 34710380
Alignment:
| Q |
139 |
cttattcttctactggagaaggaggaacaaggagaaagtgtaggttacaatgtgtatgcatgcaaaacatgtaacaaatctttcacttcatctca |
233 |
Q |
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| T |
34710287 |
cttattcttctactagagaaggagaaacaag-agaaagtgcacgttacaatgtgtatgcatgcaaaacatgcaacaaaacattcacttcatctca |
34710380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 34713882 - 34714000
Alignment:
| Q |
110 |
acaaactcctactcctttctccatcacta---cttattcttctactggagaaggaggaacaaggagaaagtgtaggttacaatgtgtatgcatgcaaaac |
206 |
Q |
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| T |
34713882 |
acaatctcctatccctttctccatcaatattgcttattcttctac---agaaggaggaacaag-agaaagtgcacgttacaatgtgtatgcatgcaaaac |
34713977 |
T |
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| Q |
207 |
atgtaacaaatctttcacttcat |
229 |
Q |
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| T |
34713978 |
atgcaaaaaaactttcacttcat |
34714000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 40689312 - 40689368
Alignment:
| Q |
108 |
ccacaaactcctactcctttctccatcactacttattcttctactggagaaggagga |
164 |
Q |
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| T |
40689312 |
ccacaatctcctatacctttctccatcactgctaattcttcaactggtgaaggagga |
40689368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1819 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold1819
Description:
Target: scaffold1819; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 863 - 758
Alignment:
| Q |
123 |
cctttctccatcactacttattcttctactggagaaggaggaacaaggagaaagtgtaggttacaatgtgtatgcatgcaaaacatgtaacaaatctttc |
222 |
Q |
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| T |
863 |
cctttctctatcactgctaattcttctactagagaggaaggaacaagtggaacacc-aggttgcaatgtgtatgcatgcaaaacatgtaaaaaaactttt |
765 |
T |
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| Q |
223 |
acttcat |
229 |
Q |
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| T |
764 |
acttcat |
758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1819; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 406 - 455
Alignment:
| Q |
186 |
caatgtgtatgcatgcaaaacatgtaacaaatctttcacttcatctcact |
235 |
Q |
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| T |
406 |
caatgtgtatgcatccaaaacatgtaacaaaactttcatttcatttcact |
455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold1104
Description:
Target: scaffold1104; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 2385 - 2280
Alignment:
| Q |
123 |
cctttctccatcactacttattcttctactggagaaggaggaacaaggagaaagtgtaggttacaatgtgtatgcatgcaaaacatgtaacaaatctttc |
222 |
Q |
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| T |
2385 |
cctttctctatcactgctaattcttctactagagaggaaggaacaagtggaacacc-aggttgcaatgtgtatgcatgcaaaacatgtaaaaaaactttt |
2287 |
T |
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| Q |
223 |
acttcat |
229 |
Q |
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| T |
2286 |
acttcat |
2280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 1928 - 1977
Alignment:
| Q |
186 |
caatgtgtatgcatgcaaaacatgtaacaaatctttcacttcatctcact |
235 |
Q |
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| T |
1928 |
caatgtgtatgcatccaaaacatgtaacaaaactttcatttcatttcact |
1977 |
T |
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