View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1106_low_8 (Length: 288)
Name: NF1106_low_8
Description: NF1106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1106_low_8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 67 - 283
Target Start/End: Complemental strand, 41417455 - 41417239
Alignment:
| Q |
67 |
catttaacattagcaattgtactatcaactttggtacattttacttcaatagaaaacacaataaagtaagtacatacattacattaatagacacaaaaat |
166 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
41417455 |
catttaacattaacaattgtactatcaactttggtacattttacttcaatagaaaacacaataaattaagtacatacattacattaatggacacaaaaat |
41417356 |
T |
|
| Q |
167 |
tattttagctgaagctgaatgaatccatgatctcatctagaccttctgatatcagtttccaaagaaccagaattacgtccaccattcaaattccaatcat |
266 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41417355 |
tattttagcggaagctgaatgaattcatgatctcatctagaccttctgatatcagtttccaaagaaccagaattacgtccaccatttaaattccaatcat |
41417256 |
T |
|
| Q |
267 |
tggtagaaccaaaagcc |
283 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
41417255 |
tggtagaaccaaaagcc |
41417239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 80 - 288
Target Start/End: Original strand, 5105280 - 5105486
Alignment:
| Q |
80 |
caattgtactatcaactttggtacattttacttcaatagaaaacacaataaagtaagtacatacattacattaatagacacaaaaattattttagctgaa |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5105280 |
caattgtactatcaactttggtacattttacttcaatagaaaacacaataaagtaagtacatacattacattaatagaca--aaaattattttagctgaa |
5105377 |
T |
|
| Q |
180 |
gctgaatgaatccatgatctcatctagaccttctgatatcagtttccaaagaaccagaattacgtccaccattcaaattccaatcattggtagaaccaaa |
279 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5105378 |
gttgaatgaatccatgatctcatctagaccttctgatatcagtttccaatgaaccagaattacgtccaccattcaaattccaatcattggtagaaccaaa |
5105477 |
T |
|
| Q |
280 |
agccttccc |
288 |
Q |
| |
|
||||||||| |
|
|
| T |
5105478 |
agccttccc |
5105486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University