View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11070_low_1 (Length: 688)
Name: NF11070_low_1
Description: NF11070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11070_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 8e-60; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 54495260 - 54495394
Alignment:
| Q |
18 |
attatttctgatatccatgctttagaaatcactgcttgttgtgtttgtgaatcccatagattatatgacccccacccatccctcactattcattctactc |
117 |
Q |
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| T |
54495260 |
attatttctgatatccatgctttagaaatcactgcttgttgtgtttgtgaatcccatagattatatgacc----cccatccctcactattcattctactc |
54495355 |
T |
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| Q |
118 |
cctttgaggtctaactcattctgatctacgggacctaaa |
156 |
Q |
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| T |
54495356 |
cctttgcggtctaactcattctgatctacgggacctaaa |
54495394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 285 - 496
Target Start/End: Original strand, 54495622 - 54495821
Alignment:
| Q |
285 |
gagttttccacaagtcataaaaaatgaatgataatttggaaacttcatgtatttgtaggagtaggagtacaaaatggaggggtaggaggtaaattgcttc |
384 |
Q |
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| T |
54495622 |
gagttttccacaagtcataaaaaatgaatgataatttggaaacttcatgtatttgtaggggtaggag--------------------ggtaaattgcttc |
54495701 |
T |
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| Q |
385 |
aaatttaaaatccacaaaatttgggatttaaaccggtgaattgacaacaaatagaa---attcttgtg-----aattagagagcatcctcactgtcatat |
476 |
Q |
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| T |
54495702 |
aaatttaaaatccacaaaatttgggatttaaaccggtgaattgacaacaaatagaagaaattcttgtggtttgaattagagagcatcctcactgtcatat |
54495801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 54495440 - 54495522
Alignment:
| Q |
157 |
acctttgaggtctaactccctttgacatcacacatcatctaacgtgtccttacacttccatcgtaacagaattgttgagagaa |
239 |
Q |
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| T |
54495440 |
acctttgaggtctaattccctttgacatcacacatcatctaacgtgtccttacacttccatcgtaacagaattgttgagagaa |
54495522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 605 - 674
Target Start/End: Original strand, 54495829 - 54495898
Alignment:
| Q |
605 |
aatggaatgattcggtcannnnnnncttacaataaaaagcttctgctaatgaattgcatttgttattctt |
674 |
Q |
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| T |
54495829 |
aatggaatgattcggtcatttttttcttacaataaaaagcttctgctaatgaattgcatctgttattctt |
54495898 |
T |
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