View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11070_low_14 (Length: 220)
Name: NF11070_low_14
Description: NF11070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11070_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 8072612 - 8072817
Alignment:
| Q |
15 |
cagagaatgacaaacattaatcatcagcctgttgtaatgccacctgagaaggaggaaatgctacataatactattaatcgagctgatttattggaaaaag |
114 |
Q |
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| T |
8072612 |
cagaaaatgacaaacattaatcatcagcctgttgtaatgccacctgagaaggaggaaatgctacataatactattaatcgagctgatttattggaaaaag |
8072711 |
T |
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| Q |
115 |
aactcttggcgaccaagaaggtattcaatatgttagatcagcatatttggttctaaagaaaacaaataaataaaatgcacaccagaacacaaatgattga |
214 |
Q |
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| T |
8072712 |
aactcttggcgaccaagaaggtattcaatatgttagatcagcatatttggttctaaagaaaacaaataaataaaatgcacacaagaacacaaatgattga |
8072811 |
T |
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| Q |
215 |
tcacat |
220 |
Q |
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|||||| |
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| T |
8072812 |
tcacat |
8072817 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 47472589 - 47472538
Alignment:
| Q |
166 |
tctaaagaaaacaaataaataaaatgcacaccagaacacaaatgattgatcac |
218 |
Q |
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| T |
47472589 |
tctaaagaaaacaaataaat-aaatgcacagaagaacataaatgatttatcac |
47472538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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