View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11070_low_15 (Length: 205)
Name: NF11070_low_15
Description: NF11070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11070_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 9e-32; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 21289201 - 21289363
Alignment:
| Q |
18 |
ctctcccgactaggacttctccttacacgcttcctcgacttcaccggtgaaacctca------tcggatttctcttcag---------------ctttcc |
96 |
Q |
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|||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
21289201 |
ctcttccgactagaacttctccttacacgcttccttgacttcaccggtgaaacctcaacctcatcggatttctcttcagcttctaccccctcagctttcc |
21289300 |
T |
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| Q |
97 |
ggcgaagctgaatctcttcaaactctttctgcttagcttgaatcctcgaactagatcttcgct |
159 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21289301 |
ggcgaagctgaatctcttgaacctctttctgcttagcttgaatcctcgaactagatcttcgct |
21289363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 21239507 - 21239345
Alignment:
| Q |
18 |
ctctcccgactaggacttctccttacacgcttcctcgacttcaccggtgaaacctcatc------ggatttctcttcagctt---------------tcc |
96 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| |
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| T |
21239507 |
ctcttccgactagaacttctccttacacgcttcctcgacttcaccggtgaaacctcaacctcattggatttctcttcagcttctaccccctcagctttcc |
21239408 |
T |
|
| Q |
97 |
ggcgaagctgaatctcttcaaactctttctgcttagcttgaatcctcgaactagatcttcgct |
159 |
Q |
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| T |
21239407 |
gacgaagctgaatctcttcaacctctttctgcttggcttgaatcctcgaactagatcttcgct |
21239345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 21239313 - 21239276
Alignment:
| Q |
153 |
cttcgcttcatcgttcaacttctttccaacgattgagc |
190 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
21239313 |
cttcgattcatcgttcaacttctttccaacgattgagc |
21239276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 21289395 - 21289432
Alignment:
| Q |
153 |
cttcgcttcatcgttcaacttctttccaacgattgagc |
190 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
21289395 |
cttcgattcatcgttcaacttctttccaacgattgagc |
21289432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 32426183 - 32426340
Alignment:
| Q |
18 |
ctctcccgactaggacttctccttacacgcttcctcgacttcaccggtgaaacctca------tcggatttctcttcag---------------ctttcc |
96 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
32426183 |
ctctccctactaggacttctcctcacacgcttcctcgacttcaccggtgaaacctcaacctcgtcggatttctcttcagcttctaccccctcagctttcc |
32426282 |
T |
|
| Q |
97 |
ggcgaagctgaatctcttcaaactctttctgcttagcttgaatcctcgaactagatct |
154 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
32426283 |
ggcgaagctgaatctcttcaacctctttctgcttagcttgaatcctcgaactcgatct |
32426340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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