View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11070_low_2 (Length: 609)
Name: NF11070_low_2
Description: NF11070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11070_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 39369453 - 39370045
Alignment:
| Q |
1 |
agacttcctaccatatgatggagatggattcaaattatcagttccctcaaagtggaaccctagcaaagaggtggaatacacaggtcaggttcttagatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39369453 |
agacttcctaccatatgatggagatggattcaaattatcagttccctcaaagtggaaccctagcaaagaggtggaatacacaggtcaggttcttagatat |
39369552 |
T |
|
| Q |
101 |
gaggacaacttcgacacaaccagcaatgtcgttgttactgtgactccaactgataagaaagccatcactgattatggttcgcctgaggaattcctctctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39369553 |
gaggacaacttcgacacaaccagcaatgtcgttgttactgtgactccaactgataagaaagccatcactgattatggttcacctgaggaattcctctctc |
39369652 |
T |
|
| Q |
201 |
aggtaaacacttgctagtactagcgctagtgtcnnnnnnnngtatgtgatagattactttagtgcttgttttctgaaatggagaaaagtgcaaattcgta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39369653 |
aggtaaacacttgctagtactagcgctagtgtcttttttttgtatgtgatagattactatagtgcttgttttctgaaatggagaaaagtgcaaattcgta |
39369752 |
T |
|
| Q |
301 |
catggaacctcaactcatgtgcaatttactacctgaagtttagaaatgttattttatgcattttataaacattaaagaacaaaatagaatgattagtttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39369753 |
catggaacctcaactcatgtgcaatttactacctgaagtttagaaatgttattttatgcattttataaacattacagaacaaaatagaatgattagtttg |
39369852 |
T |
|
| Q |
401 |
atttgagaaaacaatttctatttttattttgtgttttcacttttaactacaagaccagcacattgttttcaccctttctggtacaaatctttggaaacag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39369853 |
atttgagaaaacaatttctatttttattttgtgttttcacttttaactacaagaccagcacattgttttcaccctttctggtacaaatctttggaaacag |
39369952 |
T |
|
| Q |
501 |
aaagcaaaatgaaaataatgcgacaaatctttggaaacagaacgaaatgaaaacaaagcgacagtttttgtattataagtgattaaaaaatgt |
593 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39369953 |
aaagcaaaatgaaaataatgcgacaaatcattggaaacagaacgaaatgaaaacaaagcgacagtttttgtattataagtgattaaaaaatgt |
39370045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 13342372 - 13342415
Alignment:
| Q |
482 |
tacaaatctttggaaacagaaagcaaaatgaaaataatgcgaca |
525 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
13342372 |
tacaaatctttgtaaacagaaagcaaaatgaaaacaatgcgaca |
13342415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 526
Target Start/End: Original strand, 35657646 - 35657710
Alignment:
| Q |
462 |
attgttttcaccctttctggtacaaatctttggaaacagaaagcaaaatgaaaataatgcgacaa |
526 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||||||| ||||||||||| || ||||||| |
|
|
| T |
35657646 |
attgttttcaccctttcctaaacaaatatttggatacagaaaacaaaatgaaaacaaggcgacaa |
35657710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University