View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11070_low_3 (Length: 573)
Name: NF11070_low_3
Description: NF11070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11070_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 215 - 498
Target Start/End: Original strand, 3221787 - 3222081
Alignment:
| Q |
215 |
tgaatacacatttcactgctaattttgatgcattttaccgtgaaaatggagaagctataaa------------------cgtgcgtccatgttaaggcag |
296 |
Q |
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| T |
3221787 |
tgaatacacatttcactgcaaattttgatgcattttactgtgaaaatggagaagctataaattgtagcttctaacagaacgtgcgtccatgttaaggcag |
3221886 |
T |
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| Q |
297 |
ccactgaaaacaaaacacatactatatataatattatggaagaaagaatctcaagtagttcgaaatatgccattcatccattagtgggaatctttagaga |
396 |
Q |
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| T |
3221887 |
ccactgaaaacaaaacacatactatatataatat---ggaaggaagaatctcaagtagtttgaaatatgccattcatccattagtgggaatctttagaga |
3221983 |
T |
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| Q |
397 |
tgtcattttcgtctgtttgcctctcctttgacttgctacctagctaccttaaactcccaagttccacctatcaacacacacatcatgtctactcatcact |
496 |
Q |
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| T |
3221984 |
tgtcattttcgtctgtttgcctctcctttgacttgctac----ctaccttaaactcccaagttccacctatcaacacacacatcatgtctactcatcact |
3222079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 3186498 - 3186435
Alignment:
| Q |
363 |
atgccattcatccattagtgggaatctttagagatgtcattttcgtctgtttgcctctcctttg |
426 |
Q |
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| T |
3186498 |
atgccatgcatccattagtgggaatctcaagagaagtcatttctgtctctttgcctctcctttg |
3186435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 1140636 - 1140758
Alignment:
| Q |
8 |
agaggtgggatatgattggtatgcaacgcttttgttatttagaaaccatgttatgaagtgaagtgtgtttgagggggttatgggtagttatattatgcag |
107 |
Q |
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| T |
1140636 |
agaggtgggatatgattggtatgcaacgcttttgttttatagaaaccatgttatgaagtgaagtgtgtttgagggggttatcggtggttatactatgcag |
1140735 |
T |
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| Q |
108 |
tttggatttttaattaatttcaa |
130 |
Q |
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| T |
1140736 |
tttagattttatattaatttcaa |
1140758 |
T |
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