View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11070_low_4 (Length: 503)
Name: NF11070_low_4
Description: NF11070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11070_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 42918512 - 42918010
Alignment:
| Q |
1 |
gaaacagagtatttgaaaacatacatgaagagaaaactactttttcctgatattataaactgattaaattctgagataaataaaaatactaaggactgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42918512 |
gaaacagagtatttgaaaacatacatgaagagaaaactactttttcctgatattataaactgattaaattctgagataaataaaaatactaaggactgaa |
42918413 |
T |
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| Q |
101 |
gcaatgtgattcacaaaagatttatatgtatggttgttttgagtttctcttggtcttacaaggcttaccccacactttttgggtgtaagacagaaggact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42918412 |
gcaatgtgattcacaaaagatttatatgtatggttgttttgagtttctcttggtcttacaaggcttaccccacactttttgggtgtaagacagaaagact |
42918313 |
T |
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| Q |
201 |
gcagctttagcttagtaagcgaaacattttaaaaatatcataccttaccaagaaaggacagcaggcacatgtagcagaagggagttcacacaaccattac |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42918312 |
gcagcttcagcttagtaagcgaaacattttaaaaatatcataccttaccaagaaaggacagcaggcacatgtagcagaagggagttcacacaaccattac |
42918213 |
T |
|
| Q |
301 |
cttagatatatgatattgtaaaagagttcattacaactagcccgtaaatatatccatgacttctagtcgttacacatgctataatcgaaaagacactatt |
400 |
Q |
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| T |
42918212 |
cttagatatatgatattgtaaaagagttcattacaactagcccgtaaatatatccatgacttctagtcgttacacatgctataatcgaaaagacactatt |
42918113 |
T |
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| Q |
401 |
agagaccttaaaatctttgatcatagttgtatatctttcttgaagcccattgcaccaacttaaaattaacatagcagcaaagacaccaagtaggttcatt |
500 |
Q |
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| T |
42918112 |
agagaccttaaaatctttgatcatagttgtatatctttcttgaagcccattgcaccaacttaaaattaacatagcagcaaagacaccaagtaggttcatt |
42918013 |
T |
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| Q |
501 |
tat |
503 |
Q |
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| T |
42918012 |
tat |
42918010 |
T |
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Back To:
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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 451
Target Start/End: Original strand, 18034448 - 18034510
Alignment:
| Q |
388 |
aaaagacactattagagaccttaaaatctttgatcatagttgtatatctttcttgaagcccatt |
451 |
Q |
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|||||||| |||||||||| |||| | |||||||||||||||||||| ||||||||||||||| |
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| T |
18034448 |
aaaagacattattagagac-ttaatctatttgatcatagttgtatatcattcttgaagcccatt |
18034510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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